PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC08G15450.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GeBP

Protein Properties

Length: 447aa MW: 48328.2 Da PI: 10.3184

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC08G15450.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	99.7	2.6e-31	187	286	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifels 92 ++ r+w+ eDe+++L++li+++ak+g+ +s+d+ ++++++++++ +k+s++ql++K+rrLK+K++ ++ +k+g++p++ +ehd++++els OPUNC08G15450.1 187 RPPRVWNPEDEVTILRALISYRAKNGVlpGSSQDTGKLHNMIRGQLTVKASTTQLSDKVRRLKHKYNLILTRvTKNGRDPDLPTEHDREVYELS 280 578**********************888999********************************999899*************** PP DUF573 93 kkiWgs 98 kk+Wg+ OPUNC08G15450.1 281 KKVWGT 286 **95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.0E-27	189	285	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MAPKRPAAAS GSASEASDGE AGGPARRRSP SRSRSPSRSA SPSRSRSKTP PPNAAVLSST 60 PASAAVDFVA ASDSDAGADA DARLASPRRS RERSPRLHSD SDNSAAATAE AVEASAAAFD 120 DGDDEGNATP PPRSRRSSRV EATGIKPISS RPMDASRRPA AASSQSQRRS KRPRSSPTQH 180 SPEQHKRPPR VWNPEDEVTI LRALISYRAK NGVLPGSSQD TGKLHNMIRG QLTVKASTTQ 240 LSDKVRRLKH KYNLILTRVT KNGRDPDLPT EHDREVYELS KKVWGTKSGG VGAGSGGDRV 300 YENAEVVQSD EEQGSRDDSD EDMESGWDDH DHRNRRLKAI VIANGNGNAV TGGRSVHGNG 360 SGKGDVADKG KDMYPYLWEA VEELSKEHPS GTAFRKAFGV LDGSRARAME EKLNRFRLSE 420 IRQQLRRMDL MKETIKMVLD ALEGSDL

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MAPKRPAAAS GSASEASDGE AGGPARRRSP SRSRSPSRSA SPSRSRSKTP PPNAAVLSST  60
PASAAVDFVA ASDSDAGADA DARLASPRRS RERSPRLHSD SDNSAAATAE AVEASAAAFD  120
DGDDEGNATP PPRSRRSSRV EATGIKPISS RPMDASRRPA AASSQSQRRS KRPRSSPTQH  180
SPEQHKRPPR VWNPEDEVTI LRALISYRAK NGVLPGSSQD TGKLHNMIRG QLTVKASTTQ  240
LSDKVRRLKH KYNLILTRVT KNGRDPDLPT EHDREVYELS KKVWGTKSGG VGAGSGGDRV  300
YENAEVVQSD EEQGSRDDSD EDMESGWDDH DHRNRRLKAI VIANGNGNAV TGGRSVHGNG  360
SGKGDVADKG KDMYPYLWEA VEELSKEHPS GTAFRKAFGV LDGSRARAME EKLNRFRLSE  420
IRQQLRRMDL MKETIKMVLD ALEGSDL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012616	0.0	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648426.1	0.0	STOREKEEPER protein
TrEMBL	A0A0E0LVR9	0.0	A0A0E0LVR9_ORYPU; Uncharacterized protein
STRING	OPUNC08G15450.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2671	35	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	7e-14	DNA-binding storekeeper protein-related transcriptional regulator