PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G15320.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 353aa    MW: 37038.5 Da    PI: 8.142
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G15320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.6e-18171225256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  OPUNC08G15320.1 171 RKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 225
                      788899***********************************************98 PP
2HD-ZIP_I/II128.43.1e-41171261192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlskeq+++LEesF+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  OPUNC08G15320.1 171 RKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELR-ALK 261
                      69*************************************************************************************9.665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-18155225IPR009057Homeodomain-like
SuperFamilySSF466892.01E-18158228IPR009057Homeodomain-like
PROSITE profilePS5007117.167167227IPR001356Homeobox domain
SMARTSM003896.3E-16169231IPR001356Homeobox domain
CDDcd000862.34E-16171228No hitNo description
PfamPF000461.7E-15171225IPR001356Homeobox domain
PROSITE patternPS000270202225IPR017970Homeobox, conserved site
PfamPF021831.0E-10227261IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.5E-25227270IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MELGLRLGDA VAVADGGRPE LVLGLGVGVG AGARRGEEDE RGRRENLVGA GRWAAMAAAS  60
PEPSVRLSLV SSLGLHWPSE TGRSEASARG FDVNRAPSVA AGASGMEEDE EGPDAAPALS  120
SSPNDSGGSF PLDLSVHGLR GPAEAAAQGG GGGGERSSSR ASDDDEGASA RKKLRLSKEQ  180
SAFLEESFKE HSTLNPKQKV ALAKQLNLRP RQVEVWFQNR RARTKLKQTE VDCEYLKRCC  240
ETLTEENRRL HKELAELRAL KTARPFYMHL PATTLSMCPS CERVASNPAT ASTSAPAPAA  300
VPSPSPAPTA AARTAVASPE HRPSSFAALF AAPRGFPLTA AQPRPPPPAS NCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219227RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411960.0AK241196.1 Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648883.11e-170homeobox-leucine zipper protein HOX27 isoform X2
SwissprotA2YW031e-172HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
TrEMBLA0A0E0LVQ00.0A0A0E0LVQ0_ORYPU; Uncharacterized protein
STRINGOPUNC08G15320.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-68homeobox from Arabidopsis thaliana