PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G13990.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 351aa    MW: 36337.6 Da    PI: 7.6955
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G13990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.18.8e-333791457
      ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57
                     ++Y+eClkNhAaslGghavDGCgEfmps+ ++ +++a+lkCaACgCHRnFHRr +
  OPUNC08G13990.1 37 AVYRECLKNHAASLGGHAVDGCGEFMPSPAADaADPASLKCAACGCHRNFHRRLS 91
                     78***************************99999******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-20789IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.0E-283890IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.4183990IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.1E-303989IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.1E-28225293IPR009057Homeodomain-like
SuperFamilySSF466898.96E-17225292IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-21234290IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEAVVGVKYR PVVFPNGGAA ASAAVGKSKA TAAAAVAVYR ECLKNHAASL GGHAVDGCGE  60
FMPSPAADAA DPASLKCAAC GCHRNFHRRL SEAPPSPPLL ALPPPPPPPP QPQQQQTTAA  120
AMAVAPHLLH GNHQRREQSP EIDRVRGHHH HDGDDGDDDS EDSEMSDYDD DDRSASPLQA  180
PPPVLSPGYL PSATHMLLSL GSAPAVAASR PHAAAMGPPP PPGVATSASA SAARKRFRTK  240
FSPEQKQRMQ ALSERLGWRL QKRDEAVVEE CCREIGVGKG VFKVWMHNNK HNFLGGHSAR  300
RSATAAAAAP LLAPPPVLTD FSINGSSTHA AAAADHAAAT ASGGGGSPQS T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A1e-202342921775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047020.0AP004702.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0524F03.
GenBankAP0051590.0AP005159.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0016C11.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648556.11e-123zinc-finger homeodomain protein 10 isoform X1
RefseqXP_025875847.11e-123zinc-finger homeodomain protein 10 isoform X2
SwissprotQ6Z5281e-125ZHD10_ORYSJ; Zinc-finger homeodomain protein 10
TrEMBLA0A0E0LV870.0A0A0E0LV87_ORYPU; Uncharacterized protein
STRINGOPUNC08G13990.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.19e-23homeobox protein 34