PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC08G13780.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 291aa MW: 32193.8 Da PI: 5.9216

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC08G13780.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	135.4	3.9e-42	10	134	1	121
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lp+GfrF Ptdeel+++yL++k+ + +++ ++++vd+y+++PwdLp ++ ++ e+yfF++r++ky++g r +rat+ gyWk+tgkd OPUNC08G13780.1 10 LPAGFRFFPTDEELITYYLARKAMDATFTS-AAVRDVDLYTSDPWDLPCdssaaSTGGGGGECYFFCRRSSKYPSGARIRRATAGGYWKSTGKD 102 799**********************999.78**********943554333335569**************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdW 121 k v+++ g lvg+kktLvfy grap+gekt+W OPUNC08G13780.1 103 KGVYAAAGGLVGTKKTLVFYGGRAPRGEKTSW 134 ****************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-45	6	145	IPR003441	NAC domain
PROSITE profile	PS51005	40.356	10	161	IPR003441	NAC domain
Pfam	PF02365	1.7E-20	11	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MYRMEEEQRL PAGFRFFPTD EELITYYLAR KAMDATFTSA AVRDVDLYTS DPWDLPCDSS 60 AASTGGGGGE CYFFCRRSSK YPSGARIRRA TAGGYWKSTG KDKGVYAAAG GLVGTKKTLV 120 FYGGRAPRGE KTSWSEWVIC RVFKKQPPII DHWLEMEQEV EPNRRHLLPA APPPPPPPLS 180 GPPWQYTSRR SGGGREEDDD HGLAREESSP VVISSPSRCT SPSSRLLTHE QLHITHGHLG 240 ASSSDDLPEL MEFGDIYGGI TDDGGRTDQQ ASSSNSNSIR SLLDEPYCWN F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-36	10	146	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-36	10	146	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-36	10	146	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-36	10	146	17	166	NO APICAL MERISTEM PROTEIN
3swm_A	4e-36	10	146	20	169	NAC domain-containing protein 19
3swm_B	4e-36	10	146	20	169	NAC domain-containing protein 19
3swm_C	4e-36	10	146	20	169	NAC domain-containing protein 19
3swm_D	4e-36	10	146	20	169	NAC domain-containing protein 19
3swp_A	4e-36	10	146	20	169	NAC domain-containing protein 19
3swp_B	4e-36	10	146	20	169	NAC domain-containing protein 19
3swp_C	4e-36	10	146	20	169	NAC domain-containing protein 19
3swp_D	4e-36	10	146	20	169	NAC domain-containing protein 19
4dul_A	4e-36	10	146	17	166	NAC domain-containing protein 19
4dul_B	4e-36	10	146	17	166	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012616	2e-93	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650320.1	1e-120	NAC domain-containing protein 87 isoform X1
TrEMBL	A0A0E0LV60	0.0	A0A0E0LV60_ORYPU; Uncharacterized protein
STRING	OPUNC08G13780.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14765	21	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-49	NAC domain containing protein 58