PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G13710.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 333aa    MW: 35640.4 Da    PI: 5.5108
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G13710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.64.5e-341502633122
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssas 83 
                       ++drhski T++g RdRR+Rls+ +a+ fF+Lqd+LGfdk+skt+eWLl+q+k+ai+ l  +                               
  OPUNC08G13710.1 150 FRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDKLGFDKASKTVEWLLTQSKHAIDRLILSdsadtaapagnaaA----------------- 226
                      689**********************************************************9943332222111110................. PP

              TCP  84 nsssg....kaaksaakskksqksaasalnlakesrakarara 122
                          +    ++a++aa ++k ++sa+  ++ ++ s+a+ar r 
  OPUNC08G13710.1 227 ----PippeHSASAAAAKEKGEASAS--SSTNATSSARARNRG 263
                      ....1222122222222222233333..444444444444443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136934.039151209IPR017887Transcription factor TCP subgroup
PfamPF036341.4E-32151253IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MHFAQLVQSI DQLCPLDYYS YYYLTDLGAA LMIPPYPNNN PHHHQHHCSS NQEPPLPLQS  60
FLMSAPSSSS SLDEYDARFF FPGADVYTSG HRQEETLEAV LRQPVTTAAV SEAAVAVERW  120
APAVEGGGGG GGCGSPVSVA AAAATRRRPF RTDRHSKIRT AQGVRDRRMR LSVGVARDFF  180
ALQDKLGFDK ASKTVEWLLT QSKHAIDRLI LSDSADTAAP AGNAAAPIPP EHSASAAAAK  240
EKGEASASSS TNATSSARAR NRGHDGSSPV ALVDEHGPGV ELDWTMSGSS PAAAAAAVTA  300
STEQPMEGLE YYFQYYNHLE EIMSCDPTTT TDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126161e-162CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883271.11e-107transcription factor TB1
TrEMBLA0A0E0LV520.0A0A0E0LV52_ORYPU; Uncharacterized protein
STRINGOPUNC08G13710.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.11e-23TCP family protein