PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G13170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 340aa    MW: 37199.6 Da    PI: 4.4923
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G13170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.2e-2083136356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++t+eq++ Le+ Fe+++++  e+++eLA++lg+  rqV vWFqNrRa++k
  OPUNC08G13170.1  83 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWK 136
                      56789************************************************9 PP

2HD-ZIP_I/II132.61.5e-4282173192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      ekkrrl++eqv++LE+sFeee+kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE+d+++Lk+aydal+++++ L +++++Lr+++ 
  OPUNC08G13170.1  82 EKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHGLLSDNDRLRAQVI 173
                      69**************************************************************************************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.25E-1977140IPR009057Homeodomain-like
PROSITE profilePS5007118.23678138IPR001356Homeobox domain
SMARTSM003891.9E-1981142IPR001356Homeobox domain
CDDcd000864.33E-1983139No hitNo description
PfamPF000462.9E-1783136IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.0E-2184145IPR009057Homeodomain-like
PRINTSPR000316.3E-6109118IPR000047Helix-turn-helix motif
PROSITE patternPS000270113136IPR017970Homeobox, conserved site
PRINTSPR000316.3E-6118134IPR000047Helix-turn-helix motif
PfamPF021832.9E-16138180IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDPGRVVFDS GVPRRACGGG AQMLLFGRGG SANSSGFFRG VPATVLGMEE SRSSSAAGGK  60
RPFFTTHEEL LEEEYYDEQA PEKKRRLTAE QVQMLERSFE EENKLEPERK TELARRLGMA  120
PRQVAVWFQN RRARWKTKQL EHDFDRLKAA YDALAADHHG LLSDNDRLRA QVISLTEKLQ  180
DKETSPSSVT ITTAVQEVDQ PDEHTEAAST TGFATVNDAF AATPPGHQQQ QPPKDDHLSS  240
SGTHDGGAAV VVFDVTEGAN DHLSCESAYF ADAAEAYERD CAGHYALSSE EEDGGAVSDE  300
GCSFDLPDDA TMFGAAGVVH HHDTADEEAQ LGSWTAWFWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1006340.0AK100634.1 Oryza sativa Japonica Group cDNA clone:J023110A12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650258.11e-180homeobox-leucine zipper protein HOX5
SwissprotQ6ZA740.0HOX5_ORYSJ; Homeobox-leucine zipper protein HOX5
TrEMBLA0A0E0LUX60.0A0A0E0LUX6_ORYPU; Uncharacterized protein
STRINGOPUNC08G13170.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.18e-53homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]