PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC08G13170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 340aa MW: 37199.6 Da PI: 4.4923 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.5 | 6.2e-20 | 83 | 136 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe+++++ e+++eLA++lg+ rqV vWFqNrRa++k OPUNC08G13170.1 83 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWK 136 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 132.6 | 1.5e-42 | 82 | 173 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl++eqv++LE+sFeee+kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE+d+++Lk+aydal+++++ L +++++Lr+++ OPUNC08G13170.1 82 EKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHGLLSDNDRLRAQVI 173 69**************************************************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.25E-19 | 77 | 140 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.236 | 78 | 138 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-19 | 81 | 142 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.33E-19 | 83 | 139 | No hit | No description |
Pfam | PF00046 | 2.9E-17 | 83 | 136 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-21 | 84 | 145 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.3E-6 | 109 | 118 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 113 | 136 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.3E-6 | 118 | 134 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.9E-16 | 138 | 180 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MDPGRVVFDS GVPRRACGGG AQMLLFGRGG SANSSGFFRG VPATVLGMEE SRSSSAAGGK 60 RPFFTTHEEL LEEEYYDEQA PEKKRRLTAE QVQMLERSFE EENKLEPERK TELARRLGMA 120 PRQVAVWFQN RRARWKTKQL EHDFDRLKAA YDALAADHHG LLSDNDRLRA QVISLTEKLQ 180 DKETSPSSVT ITTAVQEVDQ PDEHTEAAST TGFATVNDAF AATPPGHQQQ QPPKDDHLSS 240 SGTHDGGAAV VVFDVTEGAN DHLSCESAYF ADAAEAYERD CAGHYALSSE EEDGGAVSDE 300 GCSFDLPDDA TMFGAAGVVH HHDTADEEAQ LGSWTAWFWS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 138 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100634 | 0.0 | AK100634.1 Oryza sativa Japonica Group cDNA clone:J023110A12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650258.1 | 1e-180 | homeobox-leucine zipper protein HOX5 | ||||
Swissprot | Q6ZA74 | 0.0 | HOX5_ORYSJ; Homeobox-leucine zipper protein HOX5 | ||||
TrEMBL | A0A0E0LUX6 | 0.0 | A0A0E0LUX6_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC08G13170.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2609 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 8e-53 | homeobox 1 |
Publications ? help Back to Top | |||
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