PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G08700.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 787aa    MW: 86855 Da    PI: 8.0205
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G08700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.3e-1963118257
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      r+ + +t +q e L+ +F+++++p+ +   eLA++l++te+qVk+WFqNrR+++kk
  OPUNC08G08700.1  63 RRYQLLTMQQKEKLNHAFQSCPNPDSNVLNELANELNMTETQVKYWFQNRRTQMKK 118
                      5677899***********************************************97 PP
2START106.25.3e-342735016204
                      HHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
            START   6 aaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                      ++  lvkk  ++ p+W         es+n++e+l k  +  +     +++ + r++++v + +++lv++l d + +W e ++    +a t++ i
  OPUNC08G08700.1 273 NESLLVKK-MENGPLWLPHMdilgvESLNYQEYLAKSRTI-GqkpvdFKVVVTRDTAIVNGSCVDLVKSLSDAN-RWRELFPgivaSANTTKII 363
                      33334444.456788887778899999*******999553.3589999**************************.******99999******** PP

                      CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..........-TTSEE...-EESSEEEEEEEECTC CS
            START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.........sssvvR...aellpSgiliepksng 160
                      s+g      g lqlm aelq++sp vp  d++f+R++ q g g w +vdvS+d   + ++         ss  +R   ++llpSg++ie+++ng
  OPUNC08G08700.1 364 STGpsnlhnGLLQLMRAELQVMSPEVPvCDVTFLRQSVQFGSGLWCVVDVSIDTVLPGESktaqpsvqtSSTAARrmeVRLLPSGCVIEEMKNG 457
                      ****************************************************98777665554232444333333455999************* PP

                      EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
            START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                      +skvtw+ h+ +++r ++ l++sl++s  a ga +wva lqr+ 
  OPUNC08G08700.1 458 YSKVTWMVHAAYDERAVPVLYQSLLRSAKALGACRWVASLQRHS 501
                      ******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-1648102IPR009057Homeodomain-like
SuperFamilySSF466891.88E-1751120IPR009057Homeodomain-like
PROSITE profilePS5007115.66159119IPR001356Homeobox domain
SMARTSM003891.0E-1661123IPR001356Homeobox domain
CDDcd000865.22E-1762118No hitNo description
PfamPF000461.2E-1663118IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-4103144IPR009057Homeodomain-like
PROSITE profilePS5084824.554248506IPR002913START domain
CDDcd088756.25E-90254502No hitNo description
SuperFamilySSF559611.07E-19255501No hitNo description
SMARTSM002348.3E-12257503IPR002913START domain
PfamPF018528.6E-27276501IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MDSELKLMAS YVSKLKFILQ KDQQQEPHTA NLLVLLGSSN QDKTNGLSGG ENRMDTRTRK  60
KPRRYQLLTM QQKEKLNHAF QSCPNPDSNV LNELANELNM TETQVKYWFQ NRRTQMKKFK  120
NNEEHKLLQK ENEELKKENA ELRNRMKNST CHACDLPLFH IDCHHWENPM LKGENKGNHG  180
VTNNIIPQAV SSLLPSSSGL VASGSNLSSN PVLMPVSVMP SSVLQSAPAV SGANFPILHN  240
LSASANDGYV ERYIFLDLAN RAMEEFFSLM KENESLLVKK MENGPLWLPH MDILGVESLN  300
YQEYLAKSRT IGQKPVDFKV VVTRDTAIVN GSCVDLVKSL SDANRWRELF PGIVASANTT  360
KIISTGPSNL HNGLLQLMRA ELQVMSPEVP VCDVTFLRQS VQFGSGLWCV VDVSIDTVLP  420
GESKTAQPSV QTSSTAARRM EVRLLPSGCV IEEMKNGYSK VTWMVHAAYD ERAVPVLYQS  480
LLRSAKALGA CRWVASLQRH SQFLSGLHKY IFRPDSTKVV MRRKVLYLVK QMTSSFTGLF  540
ASLSKASLQD GDDTHFAHQM VGGTTGEPAG LLLSATTTIW LPGVNPRRVY DHLRDEQCLG  600
EWRCLLGEQL HQGNPLPYGA PLNGETMSEF YRMVNGLHEG HAISLMSPRE MGGNISNTLL  660
LQEARTDLSG SLIVYARTDV NTVHSIMNSN LNPATVFLVS SGCAILPDCL ESFPLRPAAT  720
ADQASNSSAA IASRSETGGS FVTVTYQMFF SSQGGAAPAS SSVHQGRDAL KNATDMFKAA  780
LDTLNPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15662RTRKKPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004410.0AK100441.1 Oryza sativa Japonica Group cDNA clone:J023089M04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650917.10.0homeobox-leucine zipper protein ROC6-like isoform X2
TrEMBLA0A0E0LTE00.0A0A0E0LTE0_ORYPU; Uncharacterized protein
STRINGOPUNC08G08700.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169781212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.47e-81homeodomain GLABROUS 2