PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC08G08120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 566aa MW: 61973.5 Da PI: 6.7962 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95 | 5.4e-30 | 245 | 301 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dg+nWrKYGqK+vk+se++rsYYrCt ++C +kkkve++ d++vvei+Y+g+Hnhe OPUNC08G08120.1 245 GDGFNWRKYGQKQVKSSENSRSYYRCTNSNCLAKKKVEHCP-DGRVVEIIYRGTHNHE 301 6****************************************.***************8 PP | |||||||
2 | WRKY | 100.4 | 1.1e-31 | 412 | 469 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vkg+++prsYYrCt+ gCpv+k+ve++ +d + +++tYeg+Hnh+ OPUNC08G08120.1 412 SDGYRWRKYGQKIVKGNPNPRSYYRCTHDGCPVRKHVEKAPDDDNNIVVTYEGKHNHD 469 7********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.9E-26 | 237 | 303 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.94E-24 | 238 | 303 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.746 | 239 | 303 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.4E-33 | 244 | 302 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-22 | 246 | 301 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.6E-31 | 405 | 471 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.799 | 406 | 471 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-27 | 406 | 471 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-36 | 411 | 470 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.3E-26 | 413 | 469 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 566 aa Download sequence Send to blast |
MAGGGYPAAP PGMERPVPET GPAAEAAEPP GAKAEEGKGK DVEGKEKEME KEKEKFEAEK 60 EEMEGKKGKE SMEVEEGKEK EVKGKESMEV EEGKAKEKET KAKVKVKEEG GEEKEKEKEK 120 EKGKVEVVVE AKRRPAGVGA ETPILAVPMV AVPCFLASPA FAGHFSMSHQ AALASVTAQA 180 QIQLQSPTTP YSEGLPSPFP ITPKAVMPLQ QAPSGTEGSV RRPVLEKSAS FHSRPHHHVS 240 VNMVGDGFNW RKYGQKQVKS SENSRSYYRC TNSNCLAKKK VEHCPDGRVV EIIYRGTHNH 300 EPPQKTRFVK ERAAHITGSS GDDETLRLAN TEIIESRSPG CKLEPGAVSE ASEQQLFCSS 360 DCEGDAGNKS EDDHPSTEPQ PKRRIIESST PMTPVLRTVR EQKIIVQAGK TSDGYRWRKY 420 GQKIVKGNPN PRSYYRCTHD GCPVRKHVEK APDDDNNIVV TYEGKHNHDQ PFRSNSESKD 480 GPVPMIIPAE TTSEQPSTMT STSDQKQPIS MLKDGGNEPT KDKTSEIGGE KVVESAQTLI 540 SIKTNPDDMK NTLLKDTSAV VPVQNN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-25 | 413 | 471 | 19 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-25 | 413 | 471 | 19 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ298186 | 0.0 | DQ298186.1 Oryza sativa (japonica cultivar-group) WRKY transcription factor 82 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650463.1 | 0.0 | probable WRKY transcription factor 32 isoform X2 | ||||
TrEMBL | A0A0E0LT59 | 0.0 | A0A0E0LT59_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC08G08120.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5820 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 1e-65 | WRKY DNA-binding protein 4 |