PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G05520.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 289aa    MW: 31848.3 Da    PI: 8.5858
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G05520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.61.4e-50111521129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                      +ppGfrFhP+d+elv++yL +k+++            v i +vd++k+ePwdLp ++  + kewyfFs rd+kyatg+r+nrat+sgyWkatgk
  OPUNC08G05520.1  11 MPPGFRFHPRDDELVMDYLLHKLAAGGrgggvYGG-GVaIVDVDLNKCEPWDLPDAACVGGKEWYFFSLRDRKYATGHRTNRATRSGYWKATGK 103
                      79********************9988867664333.344***************7666789********************************* PP

              NAM  89 dkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      d++++++         +++vg++ktLvfy+grapkg+kt+Wvmhe+rle
  OPUNC08G05520.1 104 DRSITRRisaaaagePSAAVGMRKTLVFYRGRAPKGRKTEWVMHEFRLE 152
                      ******9877776555555***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-574170IPR003441NAC domain
PROSITE profilePS5100554.00311170IPR003441NAC domain
PfamPF023652.0E-2612151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MSFIGMVEAR MPPGFRFHPR DDELVMDYLL HKLAAGGRGG GVYGGGVAIV DVDLNKCEPW  60
DLPDAACVGG KEWYFFSLRD RKYATGHRTN RATRSGYWKA TGKDRSITRR ISAAAAGEPS  120
AAVGMRKTLV FYRGRAPKGR KTEWVMHEFR LEPQPLHLKE DWVLCRVFYK TRQTIPSPSS  180
EEAGTLSNEL DLPAAPSLPP LIDAYIAFDS APTTTTSMIG SYEQVSCFSG LPALPPIKGS  240
ISFGDLLAMD TTSAEKKAIR ALHNSNTAKL EFSPDWGQES GLSQMWNPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-44617015168NAC domain-containing protein 19
3swm_B5e-44617015168NAC domain-containing protein 19
3swm_C5e-44617015168NAC domain-containing protein 19
3swm_D5e-44617015168NAC domain-containing protein 19
3swp_A5e-44617015168NAC domain-containing protein 19
3swp_B5e-44617015168NAC domain-containing protein 19
3swp_C5e-44617015168NAC domain-containing protein 19
3swp_D5e-44617015168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1201970.0AK120197.1 Oryza sativa Japonica Group cDNA clone:J013036M14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648319.11e-178NAC domain-containing protein 21/22 isoform X2
SwissprotQ84TE64e-80NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0E0LS810.0A0A0E0LS81_ORYPU; Uncharacterized protein
STRINGOPUNC08G05520.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-72NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]