PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G04870.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 776aa    MW: 83409.9 Da    PI: 5.6518
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G04870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.22.1e-11107147141
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-H CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLte 41 
                      +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ 
  OPUNC08G04870.1 107 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEP 147
                      688999*********************************86 PP
2START211.14.2e-662965141206
                      HHHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                      ela +a++elv++a+++ep+W++++    +n++e+ + f+++ +      ++ea+r  +vv+m++ +lve+l+d++ q+ + +     +a+t+e
  OPUNC08G04870.1 296 ELAVAAMDELVQMAQLDEPLWSSEPapALLNEEEYARMFPRGLGpkqygLKSEASRHGAVVIMTHSNLVEILMDVN-QFATVFSsivsRASTHE 388
                      57899*********************999**********998889*******************************.88888888888****** PP

                      EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
            START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                      v+s+g      galq+m++e+q++splvp R+++fvRy++  ++g+w++vdvS+ds ++ p    v +++++pSg+li++++ng+skvtwvehv
  OPUNC08G04870.1 389 VLSTGvagnynGALQVMSMEFQVPSPLVPtRESYFVRYCKNNSDGTWAVVDVSLDSLRPSP----VLKCRRRPSGCLIQEMPNGYSKVTWVEHV 478
                      ***********************************************************98....7**************************** PP

                      E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      +++++++h+++++lv+sgla+gak+wv tl+rqce+
  OPUNC08G04870.1 479 EVDDSSVHNIYKPLVNSGLAFGAKRWVGTLDRQCER 514
                      **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.84E-1094149IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-1495149IPR009057Homeodomain-like
SMARTSM003894.7E-4105159IPR001356Homeobox domain
CDDcd000862.31E-10106149No hitNo description
PfamPF000465.1E-9107147IPR001356Homeobox domain
PROSITE profilePS5084840.065287517IPR002913START domain
SuperFamilySSF559613.16E-34288516No hitNo description
CDDcd088754.10E-123291513No hitNo description
SMARTSM002349.1E-61296514IPR002913START domain
PfamPF018521.1E-54297514IPR002913START domain
Gene3DG3DSA:3.30.530.205.9E-6360513IPR023393START-like domain
SuperFamilySSF559613.02E-24536766No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MTPARRMPPV IGRNGVAYGS PSAQLPLTQA DMLDSHHLQQ ALQQQYFDQI PVTTTAAADS  60
GDNMLHGRAD AGGLVDEFES KSCSENVDGA GDGLSGDDQD PNQRPRKKRY HRHTQHQIQE  120
MEAFFKECPH PDDKQRKELS RELGLEPLQN QHERHENAQL RAENDKLRAE NMRYKEALSS  180
ASCPNCGGPA ALGEMSFDEH HLRVENARLR DEIDRISGIA AKHVGKPIVS FPVLSSPLAV  240
AAARSPLDLA GAYGVPHHHP ATGLDMFAGG GAGDLLRSVS GVAPHPLDAD KPMIVELAVA  300
AMDELVQMAQ LDEPLWSSEP APALLNEEEY ARMFPRGLGP KQYGLKSEAS RHGAVVIMTH  360
SNLVEILMDV NQFATVFSSI VSRASTHEVL STGVAGNYNG ALQVMSMEFQ VPSPLVPTRE  420
SYFVRYCKNN SDGTWAVVDV SLDSLRPSPV LKCRRRPSGC LIQEMPNGYS KVTWVEHVEV  480
DDSSVHNIYK PLVNSGLAFG AKRWVGTLDR QCERLASAMA SNIPNGDLGV ITSVEGRKSM  540
LKLAERMVAS FCGGVTASVA HQWTTLSGSG AEDVRVMTRK SVDDPGRPPG IVLNAATSFW  600
LPVPPAAVFD FLRDETSRSE WDILSNGGAV QEMAHIANGR DHGNSVSLLR VNSANSNQSN  660
MLILQESCTD ASGSYVVYAP VDIVAMNVVL NGGDPDYVAL LPSGFAILPD GPSGNSQAVG  720
ENGSGGGSLL TVAFQILVDS VPTAKLSLGS VATVNSLIAC TVERIKAAVC RDSNPQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0779930.0AB077993.1 Oryza sativa mRNA for Roc1, complete cds.
GenBankAK1204960.0AK120496.1 Oryza sativa Japonica Group cDNA clone:J013120I03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650023.10.0homeobox-leucine zipper protein ROC1 isoform X2
SwissprotQ6ZAR00.0ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBLA0A0E0LRZ70.0A0A0E0LRZ7_ORYPU; Uncharacterized protein
STRINGOPUNC08G04870.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  3. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  4. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]