PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G04240.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 276aa    MW: 29620.9 Da    PI: 7.0631
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G04240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.74.5e-1180136155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++ k++g+++A+++d  s+  g krk  + g++ t+e Aa+a++ a++k++g
  OPUNC08G04240.1  80 SRYHGVTRLKWSGKFEAHLWDnTSQvEGrKRKGKH-GSYVTEENAARAHDLAALKYWG 136
                      79*******************55558777778888.999999**************98 PP
2AP249.31.2e-15181234155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++k +grW A+I    e +    k ++lg+f t+ eAa+a++ a+ +l+g
  OPUNC08G04240.1 181 SSYRGVTRRK-DGRWQARIGRIGEsR--DtKDIYLGTFETEIEAAEAYDLAAIELRG 234
                      67*****999.9******99953323..36**********99*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-880136IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-1180147IPR016177DNA-binding domain
SMARTSM003802.3E-1381152IPR001471AP2/ERF domain
PROSITE profilePS5103215.75181146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-1081147IPR001471AP2/ERF domain
PfamPF008472.4E-11181234IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-17181244IPR016177DNA-binding domain
CDDcd000188.29E-20181244No hitNo description
SMARTSM003801.6E-25182248IPR001471AP2/ERF domain
PROSITE profilePS5103218.505182242IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-18182242IPR001471AP2/ERF domain
PRINTSPR003678.6E-8183194IPR001471AP2/ERF domain
PRINTSPR003678.6E-8224244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MASVQPASPS DPALPPPPPE PAAAGGEEIA ALDEQLAVAD GGGGGGGGGD DEKAAAAEGG  60
GGGGKLVAEA MRKYAAPRSS RYHGVTRLKW SGKFEAHLWD NTSQVEGRKR KGKHGSYVTE  120
ENAARAHDLA ALKYWGAGPN TKLNFNVSDY EKEIERMKTM SQDEFVVYIR RQSSCFSRGT  180
SSYRGVTRRK DGRWQARIGR IGESRDTKDI YLGTFETEIE AAEAYDLAAI ELRGVHAVTN  240
FDISNYCEDG LKKLEASSEV PKLLEGPSKA AKLAGR
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851180.0AY685118.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D9 (AP2D9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650903.11e-152AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ84Z021e-65CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0E0LRR90.0A0A0E0LRR9_ORYPU; Uncharacterized protein
STRINGOPUNC08G04240.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78643548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.12e-66AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]