PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC08G03850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 222aa MW: 24541.9 Da PI: 4.1107 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97.7 | 1.2e-30 | 14 | 119 | 1 | 100 |
DUF260 1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer.....edamsslvyeAearardPvyGavgvilklqqqle 88 aCaaC++++ +C++dC lap fpa++p++f+++h +FG++++l++l+a e r + +++++ A+ar++dPv+Ga+g ilklqqql+ OPUNC08G03850.1 14 ACAACAHQGAsSCPPDCRLAPQFPADKPEHFRYAHLMFGMERILRFLEAEAEGIRpngttVISTATVIDLADARVEDPVHGAYGRILKLQQQLD 107 7********999************************************986655655544788999**************************** PP DUF260 89 qlkaelallkee 100 +lkaela+l+++ OPUNC08G03850.1 108 RLKAELARLHHP 119 *******99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 14.311 | 13 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-24 | 14 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MAEPSPTPTT TQQACAACAH QGASSCPPDC RLAPQFPADK PEHFRYAHLM FGMERILRFL 60 EAEAEGIRPN GTTVISTATV IDLADARVED PVHGAYGRIL KLQQQLDRLK AELARLHHPA 120 TATAPSPGPA DDDVALQPPA QLSTPPALAR TEEEQEEDVD DDDEEDEEEE EEEEEDHVLE 180 PAMDAAATSG ERQEEGYFQR HNYFTVVTSS QYKLLKINST EY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0LRM2 | 1e-160 | A0A0E0LRM2_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC08G03850.1 | 1e-161 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16910 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 7e-14 | LOB domain-containing protein 1 |