PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G03450.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 277aa    MW: 29083.4 Da    PI: 6.2906
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G03450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like42.61.3e-131091382655
          G2-like  26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       A P ++lelm+vk+Ltl+hvkSHLQ+YR+
  OPUNC08G03450.1 109 AAAPFSVLELMDVKDLTLAHVKSHLQMYRT 138
                      699**************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-123852IPR009057Homeodomain-like
SuperFamilySSF466898.96E-5104139IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-8108138IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.1E-12110139IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MELFPSQPDL SLQIGLPTGA TAAAHAHGHD HHHHALNARF FAAAAAAGAG GNNPAMASSS  60
SSSLQLPLPM PLPLPVPMAP AGAGGLQFYP DAMLRPIRGV PLYHHQHAAA APFSVLELMD  120
VKDLTLAHVK SHLQMYRTVK NTERPAASSD QADGFENGSA GEICDENSLD LHGGCRPEAM  180
SAAIAVAAAA RHGRLAACND HGSSTGAHGA LWNSSSREDW SGFPIESNTG SMQTLKDMQS  240
KSLEILSDMN SCVSETTSSN SELNLEFTLG RPQNRPN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126161e-91CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648943.11e-103probable transcription factor RL9 isoform X1
TrEMBLA0A0E0LRH70.0A0A0E0LRH7_ORYPU; Uncharacterized protein
STRINGOPUNC08G03450.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47213665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.16e-21G2-like family protein