PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G03310.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 720aa    MW: 79823.5 Da    PI: 4.3733
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G03310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.52.2e-5291421128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp GfrFhPtdeelv +yLk k++g+  +++evi+e+d++k+ePwdLp k  +++++ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ +
  OPUNC08G03310.1   9 LPLGFRFHPTDEELVRHYLKGKITGQIRSEAEVIPEIDVCKCEPWDLPdKsLIRSDDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRVI 102
                      699************************99999***************96446677888************************************ PP

              NAM  93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       sk    k++++g+kktLvf++grapkge+t W+mheyr 
  OPUNC08G03310.1 103 RSKgekkKQQVIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142
                      **987766677***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-593163IPR003441NAC domain
PROSITE profilePS5100557.5689163IPR003441NAC domain
PfamPF023651.3E-2710141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MTVMELKKLP LGFRFHPTDE ELVRHYLKGK ITGQIRSEAE VIPEIDVCKC EPWDLPDKSL  60
IRSDDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIRSKGEKKK QQVIGMKKTL  120
VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FRKQEEKIER PSPDEMDRSG  180
YSPTPSRSTP DNMEPNEDGN TPLNRESPES ALHESPIDLP APTEAQAAQL TRWLADRTDN  240
VTTNEVNISH MPHHGLDAGA KASPSVGAFP QLIGSQQNIH DNDELATISA PMLPHEDFNN  300
FPLGAIGNFD GNMKPRDPVE EFLNQTIADP DEHSSTTSKA QYDSDTGIMP TEFENHGMMQ  360
GEFMDDLSGL ENLGFWPDES NPQLSALYED APLLPYDSTD QDVLSMDSGA ESLQDLFNSM  420
DDCNARNNVW SNEPFLQGTG FPMSWQLQSN SAFQNQGTAK RRVMLQLSES LSPDFDASMN  480
RDECEDEESG IVVTSTYVNE AAEESTAEKD MPSDGDDAEP TGITILRRHH APTANSLSDG  540
DDAESTGITI LRRRQAPNAS LLSDGDDAES TGITILRRRQ APTASSGSSF TQQGAAVQRV  600
RLQSDLNAAP CSSVDGSSSC IMDESESERN MEKPEIEEHA GSTLAEGDDL SGTCHEDDQK  660
DVPEHDASAA NAKSVLRLRK TAEGSDKENK QEEEEGVLDS HVRAPGNKRG FPSYIIWLLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-46916417166NO APICAL MERISTEM PROTEIN
1ut4_B8e-46916417166NO APICAL MERISTEM PROTEIN
1ut7_A8e-46916417166NO APICAL MERISTEM PROTEIN
1ut7_B8e-46916417166NO APICAL MERISTEM PROTEIN
4dul_A8e-46916417166NAC domain-containing protein 19
4dul_B8e-46916417166NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8329680.0CT832968.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA203B11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650289.10.0NAC domain-containing protein 14 isoform X2
TrEMBLA0A0E0LRG30.0A0A0E0LRG3_ORYPU; Uncharacterized protein
STRINGOPUNC08G03310.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.21e-69NAC 014