PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G03280.6
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 839aa    MW: 92167.3 Da    PI: 6.9793
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G03280.6genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.9e-15115159147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT+ E++++++a k++G   W +I +++g ++t+ q++s+ qk+
  OPUNC08G03280.6 115 RERWTEAEHKRFLEALKLYGRA-WQRIEEHVG-TKTAVQIRSHAQKF 159
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.51E-16109165IPR009057Homeodomain-like
PROSITE profilePS5129419.147110164IPR017930Myb domain
TIGRFAMsTIGR015572.0E-16113162IPR006447Myb domain, plants
SMARTSM007176.5E-12114162IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-8115155IPR009057Homeodomain-like
PfamPF002491.8E-12115158IPR001005SANT/Myb domain
CDDcd001671.28E-8117160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MARPVTAAVA GCSGTRFGSG WLVDPLRFGW GATQAAVWRA AGVCGAERAS ELGWDCFACS  60
RGRRRLAFVR WWCCARFKEV FGLSRLTAIG SIQINSSGEE AVVKVRKPYT ITKQRERWTE  120
AEHKRFLEAL KLYGRAWQRI EEHVGTKTAV QIRSHAQKFF TKLEKEAINN GTSPGQAHDI  180
DIPPPRPKRK PNSPYPRKCS LSSETSTREV PNDKTTKSNM TNNSTAQMAG DAVLEKLQRK  240
EISEKGSCSE VLNLFREVPS ASFSSVNKSS SNHGASRGLE PTKIEVKDVV ILERDSISNG  300
AGKDVKDIDD QEMERLNGIH ISSKTDHSHE NCLDTSRQQF KPKSNSVETT YVDWSAVKAS  360
HYQMDRNGVT DFQATGTEGS HPDQTSDQMG ASGTMNQCIH PTLSVDPKFD GNATAQPFPH  420
NYAAFAPMIQ CHCNQDAYRS FANMSSTFSS MLVSTLLSNP AIHAAARLAA SYWPTVDSNT  480
PDPNQENLSE SAQGSHAGSP PNMASIVAAT VAAASAWWAT QGLLPLFPPP IAFPFVPAPT  540
APFSTADVQR AQEKDIDCPI DNAQKELQET RKQDKSEAMK VIVSSETDES GKGEVSLHTE  600
LKISPADKAD TKPATGADTS DVFGNKKKQD RSSCGSNTPS SSDIEADNAP EKQEKANDKA  660
NQASCSNSSA GDNNHRRFRS SASTSDSWKE VSEEVVVYQH FAYSHLSYSL NIHHCFSNSH  720
FCCQGRLAFD ALFSRERLPQ SFSPPQVEGS KEISKEEEDE VTTVTVDLNK NATIIDQELD  780
TVDEPRASFP NELSNLKLKS RRTGFKPYKR CSVEAKENRV PASDEVGTKR IRLESETST
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00654PBMTransfer from LOC_Os08g06110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0044600.0AP004460.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0438H08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649844.10.0protein LHY isoform X2
RefseqXP_015649845.10.0protein LHY isoform X2
TrEMBLA0A0E0LRF70.0A0A0E0LRF7_ORYPU; Uncharacterized protein
STRINGOPUNC08G03280.60.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60313447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.38e-39MYB_related family protein