PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC08G03280.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 734aa MW: 80387.8 Da PI: 6.5194 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.3e-15 | 79 | 123 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+ E++++++a k++G W +I +++g ++t+ q++s+ qk+ OPUNC08G03280.5 79 RERWTEAEHKRFLEALKLYGRA-WQRIEEHVG-TKTAVQIRSHAQKF 123 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 26 | No hit | No description |
SuperFamily | SSF46689 | 2.92E-16 | 73 | 129 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.147 | 74 | 128 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.7E-16 | 77 | 126 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.5E-12 | 78 | 126 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-12 | 79 | 122 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-8 | 79 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.06E-8 | 81 | 124 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 734 aa Download sequence Send to blast |
MARPVTAAVA GDGGWHLFGG GAVLGCFAEA SSLSFRVRPR FKEVFGLSRL TAIGSIQINS 60 SGEEAVVKVR KPYTITKQRE RWTEAEHKRF LEALKLYGRA WQRIEEHVGT KTAVQIRSHA 120 QKFFTKLEKE AINNGTSPGQ AHDIDIPPPR PKRKPNSPYP RKCSLSSETS TREVPNDKTT 180 KSNMTNNSTA QMAGDAVLEK LQRKEISEKG SCSEVLNLFR EVPSASFSSV NKSSSNHGAS 240 RGLEPTKIEV KDVVILERDS ISNGAGKDVK DIDDQEMERL NGIHISSKTD HSHENCLDTS 300 RQQFKPKSNS VETTYVDWSA VKASHYQMDR NGVTDFQATG TEGSHPDQTS DQMGASGTMN 360 QCIHPTLSVD PKFDGNATAQ PFPHNYAAFA PMIQCHCNQD AYRSFANMSS TFSSMLVSTL 420 LSNPAIHAAA RLAASYWPTV DSNTPDPNQE NLSESAQGSH AGSPPNMASI VAATRAQEKD 480 IDCPIDNAQK ELQETRKQDK SEAMKVIVSS ETDESGKGEV SLHTELKISP ADKADTKPAT 540 GADTSDVFGN KKKQDRSSCG SNTPSSSDIE ADNAPEKQEK ANDKANQASC SNSSAGDNNH 600 RRFRSSASTS DSWKEVSEEG RLAFDALFSR ERLPQSFSPP QVEGSKEISK EEEDEVTTVT 660 VDLNKNATII DQELDTVDEP RASFPNELSN LKLKSRRTGF KPYKRCSVEA KENRVPASDE 720 VGTKRIRLES ETST |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00654 | PBM | Transfer from LOC_Os08g06110 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242771 | 0.0 | AK242771.1 Oryza sativa Japonica Group cDNA, clone: J090053J23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649844.1 | 0.0 | protein LHY isoform X2 | ||||
Refseq | XP_015649845.1 | 0.0 | protein LHY isoform X2 | ||||
TrEMBL | A0A0E0LRF6 | 0.0 | A0A0E0LRF6_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC08G03280.6 | 0.0 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01060.4 | 2e-39 | MYB_related family protein |