PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G02090.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 788aa    MW: 85109.8 Da    PI: 6.5098
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G02090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.4e-21121176156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  OPUNC08G02090.1 121 KKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 176
                      688999***********************************************999 PP
2START202.22.2e-632975191206
                      HHHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                      ela +a++elv++a+++ep+W      e + ++e+ ++f+++ +      ++ea+r+++vv+m+++ lve l+d++ qW+  +     +a+tle
  OPUNC08G02090.1 297 ELAVAAMEELVRMAQLGEPLWAPALggEALSEEEYARTFPRGLGpkspeLRSEASRETAVVIMNHVSLVEMLMDVG-QWTALFSsivsRAATLE 389
                      57899********************999***********99888********************************.99999999999****** PP

                      EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-E.ESSEEEEEEEECTCEEEEEEEE- CS
            START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRae.llpSgiliepksnghskvtwveh 169
                      v+s+g      galqlm+ae+q++splvp R+  f+Ry++q+++g+w++vdvS+d  +     ++ +R++ ++pSg+li++++ng+skvtwveh
  OPUNC08G02090.1 390 VLSTGvagnhnGALQLMSAEFQMPSPLVPtRETQFLRYCKQHPDGTWAVVDVSLDGLRAGG-CQPPARGHrRRPSGCLIQEMPNGYSKVTWVEH 482
                      **********************************************************998.45666665278********************* PP

                      EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      v+ +++++h+l++++v+sg+a+ga++wvatl+rqce+
  OPUNC08G02090.1 483 VEADDQMVHNLYKPVVNSGMAFGARRWVATLERQCER 519
                      ***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-23106176IPR009057Homeodomain-like
SuperFamilySSF466892.21E-20106178IPR009057Homeodomain-like
PROSITE profilePS5007117.394118178IPR001356Homeobox domain
SMARTSM003891.1E-20119182IPR001356Homeobox domain
CDDcd000867.49E-20120179No hitNo description
PfamPF000462.4E-18121176IPR001356Homeobox domain
PROSITE patternPS000270153176IPR017970Homeobox, conserved site
PROSITE profilePS5084843.495288522IPR002913START domain
SuperFamilySSF559611.53E-34289521No hitNo description
CDDcd088752.49E-120292518No hitNo description
SMARTSM002344.4E-59297519IPR002913START domain
PfamPF018525.0E-53298519IPR002913START domain
Gene3DG3DSA:3.30.530.207.6E-6363518IPR023393START-like domain
SuperFamilySSF559615.18E-26539762No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MMIPGRNMSP AMIGRPNGGG GVAYASSSSA LSLGQSLLDG HHHQLPSLLQ QHHNGHHLLD  60
QHQHQQHQLP PQATTTSESD ARAPRDELEM SKSGGSDNLE SGGGGGGGSG EDQDPNQRPR  120
KKRYHRHTQH QIQELEAFFK ECPHPDDKQR KELSRELGLE PLQVKFWFQN KRTQMKTQHE  180
RHENNALRAE NEKLRAENMR YKEALANASC PNCGGPAAIG EMSFDEHHLR LENARLRDEI  240
DRISAIAAKY VGKPAAAVSA AYPPLPPSNR SPLDHMGMPG AGSDVFGADF DKPLVIELAV  300
AAMEELVRMA QLGEPLWAPA LGGEALSEEE YARTFPRGLG PKSPELRSEA SRETAVVIMN  360
HVSLVEMLMD VGQWTALFSS IVSRAATLEV LSTGVAGNHN GALQLMSAEF QMPSPLVPTR  420
ETQFLRYCKQ HPDGTWAVVD VSLDGLRAGG CQPPARGHRR RPSGCLIQEM PNGYSKVTWV  480
EHVEADDQMV HNLYKPVVNS GMAFGARRWV ATLERQCERL ASAMASNVAS SGDAGVITTS  540
EGRRSMLKLA ERMVASFCGG VTASTTHQWT TLSGSGAEDV RVMTRKSVDD PGRPPGIILN  600
AATSFWLPVP PSRVFDFLRD DSTRSEWDIL SNGGVVQEMA HIANGRDHGN AVSLLRVNNA  660
NSNQSNMLIL QECCTDATGS YVIYAPVDVV AMNVVLNGGD PDYVALLPSG FAILPDGPDG  720
GGGSLLTVAF QILVDSVPTA KLSLGSVATV NSLIACTVER IKAAITGENG VAPCPRRSRE  780
GSRANSEV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3185630.0AK318563.1 Oryza sativa Japonica Group cDNA, clone: J075197C04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648539.10.0homeobox-leucine zipper protein ROC7
SwissprotA2YR020.0ROC7_ORYSI; Homeobox-leucine zipper protein ROC7
TrEMBLA0A0E0LR030.0A0A0E0LR03_ORYPU; Uncharacterized protein
STRINGOPUNC08G02090.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2