PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC08G01880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LSD | ||||||||
Protein Properties | Length: 167aa MW: 18121.2 Da PI: 9.2084 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 27.5 | 5.4e-09 | 67 | 89 | 1 | 23 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 C+gC tlL Y rGA+++RC++C+ OPUNC08G01880.1 67 CSGCPTLLFYNRGASNIRCPSCN 89 **********************8 PP | |||||||
2 | zf-LSD1 | 32.2 | 1.7e-10 | 105 | 129 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+ P+GA+ V+Ca C V OPUNC08G01880.1 105 CGQCRTTLMHPPGASTVQCATCRYV 129 **********************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 5.7E-5 | 24 | 54 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.8E-10 | 65 | 92 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.3E-9 | 67 | 89 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.2E-10 | 102 | 132 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.6E-11 | 105 | 129 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MMMMMIHPTT VVVVAARRGH MQDQLICSGC RRVVQFRRGV AGVCCPGCNT LTAVNPSAAA 60 DMSELICSGC PTLLFYNRGA SNIRCPSCNR LNSTRSANQI AHLTCGQCRT TLMHPPGAST 120 VQCATCRYVN HVRDARPQTV LVENPKTLDD KGKLVSNVVV GVTSWKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120454 | 0.0 | AK120454.1 Oryza sativa Japonica Group cDNA clone:J013104B05, full insert sequence. | |||
GenBank | CT830765 | 0.0 | CT830765.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA016M05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648991.1 | 1e-104 | protein LOL4 | ||||
Swissprot | Q84UR0 | 1e-105 | LOL4_ORYSJ; Protein LOL4 | ||||
TrEMBL | A0A0E0LQX3 | 1e-119 | A0A0E0LQX3_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC08G01880.1 | 1e-120 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12333 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 9e-40 | LSD family protein |
Publications ? help Back to Top | |||
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