PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC08G01030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 242aa MW: 27363.4 Da PI: 7.0315 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.4 | 1.1e-24 | 10 | 56 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 rien rqvtf+kRr+g+lKKA ELSvLCda++ +iifs +gkly+ OPUNC08G01030.1 10 RIENPVHRQVTFCKRRAGLLKKARELSVLCDADIGIIIFSAHGKLYD 56 8********************************************97 PP | |||||||
2 | K-box | 32.7 | 3.1e-12 | 114 | 192 | 9 | 86 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLe.sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 ++ + +qe+ Lk+ei+ Lq+ +R + G++ + ++++eL+ Le+ Le + +iRs K+ +l++ e lq+k e OPUNC08G01030.1 114 ACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNSANeHMTVEELNALERYLEIWMYNIRSAKEGMLKAANEILQEKIVE 192 4445556679***********************99726************************************99765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.44E-24 | 1 | 63 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.576 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.5E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.01E-34 | 2 | 113 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-23 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 8.691 | 119 | 209 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 8.3E-13 | 120 | 189 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MARGKVQLRR IENPVHRQVT FCKRRAGLLK KARELSVLCD ADIGIIIFSA HGKLYDLATT 60 GYLHLASASS PSNQIKKGFE LSSDIPWRLI DFLNRTMEEL IERYKSASGE QANACGDQRM 120 DPKQEAMVLK QEINLLQKGL RYIYGNSANE HMTVEELNAL ERYLEIWMYN IRSAKEGMLK 180 AANEILQEKI VEQNGLIDVG MMVADQQNGH FSTVPLLEEI TNPLTILSGY STCRGSEMGY 240 SF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-15 | 1 | 60 | 1 | 60 | MEF2C |
5f28_B | 2e-15 | 1 | 60 | 1 | 60 | MEF2C |
5f28_C | 2e-15 | 1 | 60 | 1 | 60 | MEF2C |
5f28_D | 2e-15 | 1 | 60 | 1 | 60 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004566 | 1e-150 | AP004566.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0498H04. | |||
GenBank | AP014964 | 1e-150 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 1e-150 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650791.1 | 1e-142 | MADS-box transcription factor 26 | ||||
Swissprot | A2YQK9 | 1e-143 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 1e-143 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | A0A0E0LQL4 | 1e-180 | A0A0E0LQL4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC08G01030.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 1e-45 | AGAMOUS-like 12 |
Publications ? help Back to Top | |||
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