PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G00950.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 351aa    MW: 37862.6 Da    PI: 9.7402
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G00950.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.84.4e-49281532128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      +pGfrFhPt+eel+ +yL++kvegk++++ e i+ vd+y+++PwdLp+ ++ ++kew+f+++rd+ky++g+r+nr+t sgyWkatg d+ v+++
  OPUNC08G00950.2  28 MPGFRFHPTEEELIEFYLRRKVEGKRFNI-ELIAFVDLYRYDPWDLPALASIGDKEWFFYVPRDRKYRNGDRPNRVTPSGYWKATGADRMVKVE 120
                      79***************************.89***************888889***************************************** PP

              NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ +glkktLvfy g+apkg +++W+m+eyrl
  OPUNC08G00950.2 121 GDRPIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 153
                      *******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-5627173IPR003441NAC domain
PROSITE profilePS5100555.0327173IPR003441NAC domain
PfamPF023651.4E-2429153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MRGDHHQDVV AARGAGGGDD GQTHDMVMPG FRFHPTEEEL IEFYLRRKVE GKRFNIELIA  60
FVDLYRYDPW DLPALASIGD KEWFFYVPRD RKYRNGDRPN RVTPSGYWKA TGADRMVKVE  120
GDRPIGLKKT LVFYVGKAPK GLRSSWIMNE YRLPHGDADR YQKEISLCRV YKRPGIEDNF  180
HLTGTTTKSS GSKAAAAAMG KKHAAAHRTS SAAAAPRLAP MFDAGGHHSS ALMGKASSAY  240
NAQHAAAEGT NAIAMSLSAA AAGATTAVAA ALHPPAAMFR STASVASLSS TTSTEEDGTS  300
LFHLKGAATN TMQQLPASTH ALLNTNSSAM ATIPIDELSR AIGSYSNHHQ G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-552017310165NO APICAL MERISTEM PROTEIN
1ut4_B1e-552017310165NO APICAL MERISTEM PROTEIN
1ut7_A1e-552017310165NO APICAL MERISTEM PROTEIN
1ut7_B1e-552017310165NO APICAL MERISTEM PROTEIN
4dul_A1e-552017310165NAC domain-containing protein 19
4dul_B1e-552017310165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0710520.0AK071052.1 Oryza sativa Japonica Group cDNA clone:J023075E09, full insert sequence.
GenBankAK0722750.0AK072275.1 Oryza sativa Japonica Group cDNA clone:J023012F04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659059.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
TrEMBLA0A0E0LQK60.0A0A0E0LQK6_ORYPU; Uncharacterized protein
STRINGOPUNC08G00950.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.12e-97NAC domain containing protein 35