PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G00950.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 373aa    MW: 40101.9 Da    PI: 9.5022
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G00950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.74.9e-49501752128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      +pGfrFhPt+eel+ +yL++kvegk++++ e i+ vd+y+++PwdLp+ ++ ++kew+f+++rd+ky++g+r+nr+t sgyWkatg d+ v+++
  OPUNC08G00950.1  50 MPGFRFHPTEEELIEFYLRRKVEGKRFNI-ELIAFVDLYRYDPWDLPALASIGDKEWFFYVPRDRKYRNGDRPNRVTPSGYWKATGADRMVKVE 142
                      79***************************.89***************888889***************************************** PP

              NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ +glkktLvfy g+apkg +++W+m+eyrl
  OPUNC08G00950.1 143 GDRPIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 175
                      *******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-5649195IPR003441NAC domain
PROSITE profilePS5100555.0349195IPR003441NAC domain
PfamPF023651.6E-2451175IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MSAAGGCVEG DETRVDRRSS SSMRGDHHQD VVAARGAGGG DDGQTHDMVM PGFRFHPTEE  60
ELIEFYLRRK VEGKRFNIEL IAFVDLYRYD PWDLPALASI GDKEWFFYVP RDRKYRNGDR  120
PNRVTPSGYW KATGADRMVK VEGDRPIGLK KTLVFYVGKA PKGLRSSWIM NEYRLPHGDA  180
DRYQKEISLC RVYKRPGIED NFHLTGTTTK SSGSKAAAAA MGKKHAAAHR TSSAAAAPRL  240
APMFDAGGHH SSALMGKASS AYNAQHAAAE GTNAIAMSLS AAAAGATTAV AAALHPPAAM  300
FRSTASVASL SSTTSTEEDG TSLFHLKGAA TNTMQQLPAS THALLNTNSS AMATIPIDEL  360
SRAIGSYSNH HQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-554219510165NO APICAL MERISTEM PROTEIN
1ut4_B3e-554219510165NO APICAL MERISTEM PROTEIN
1ut7_A3e-554219510165NO APICAL MERISTEM PROTEIN
1ut7_B3e-554219510165NO APICAL MERISTEM PROTEIN
4dul_A3e-554219510165NAC domain-containing protein 19
4dul_B3e-554219510165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0710520.0AK071052.1 Oryza sativa Japonica Group cDNA clone:J023075E09, full insert sequence.
GenBankAK0722750.0AK072275.1 Oryza sativa Japonica Group cDNA clone:J023012F04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659059.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
TrEMBLA0A0E0LQK60.0A0A0E0LQK6_ORYPU; Uncharacterized protein
STRINGOPUNC08G00950.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77063650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.22e-97NAC domain containing protein 35