PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC08G00600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 307aa MW: 32907.8 Da PI: 6.8541 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.2 | 1.6e-09 | 174 | 214 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++YIk L OPUNC08G00600.1 174 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYIKFL 214 699*****************87.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.459 | 165 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-15 | 170 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.0E-15 | 171 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-13 | 171 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.8E-7 | 175 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.31E-7 | 188 | 219 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010500 | Biological Process | transmitting tissue development | ||||
GO:0048462 | Biological Process | carpel formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MDNMTHNSSS SSSWDLDMSL GSHHHPLLFD QPPPPPPPPP PPPPPPLPFD LHHHHHHHHP 60 LDPSPSSSLF PPPPPHHHGH HLHPLDLDQR RGHHEYGGGH DQGGEEEMRL QQEAAGGGGQ 120 DGGGGEDADE ELGAMKEMMY RIAAMQPVDI DPATIKKPRR RNVRISDDPQ SVAARHRRER 180 ISERIRILQR LVPGGTKMDT ASMLDEAIRY IKFLKRQVQE LQHQPGGGPP PPPPQYPAGA 240 APAAGPSTSA VGPPGRPFMP LGGGGPMIDW VGLTRPVDIH GPTSSSSSSS MGGALGFGFG 300 GGGHGMH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004462 | 0.0 | AP004462.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0450B04. | |||
GenBank | AP004584 | 0.0 | AP004584.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0007D08. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015695922.1 | 2e-99 | PREDICTED: LOW QUALITY PROTEIN: transcription factor HEC3-like | ||||
TrEMBL | A0A0E0LQG4 | 0.0 | A0A0E0LQG4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC08G00600.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9051 | 32 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09750.1 | 4e-35 | bHLH family protein |