PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC08G00360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 341aa MW: 37803.1 Da PI: 6.3169 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.6 | 2.1e-52 | 14 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka....eekewyfFskrdkkyatgkrknratksgyWkat 86 +ppGfrFhPt+eelv +yL++kv+++k++l ++i+e+d+y++ePwdL++ + e++ewyfFs +d+ky++g+r+nrat++g+Wkat OPUNC08G00360.1 14 VPPGFRFHPTEEELVGYYLARKVASQKIDL-DIIQELDLYRIEPWDLQErckyG--GhggdEQTEWYFFSYKDRKYPSGTRTNRATAAGFWKAT 104 69****************************.99**************9535441..14443666****************************** PP NAM 87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+dk+vls+ +++++g++ktLvfykgrap+g+ktdW++heyrl OPUNC08G00360.1 105 GRDKPVLSSspSTRVIGMRKTLVFYKGRAPNGRKTDWIIHEYRL 148 *******99888889***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.19E-57 | 8 | 182 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.46 | 14 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-26 | 15 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 341 aa Download sequence Send to blast |
MDRHQEEAGE SPCVPPGFRF HPTEEELVGY YLARKVASQK IDLDIIQELD LYRIEPWDLQ 60 ERCKYGGHGG DEQTEWYFFS YKDRKYPSGT RTNRATAAGF WKATGRDKPV LSSSPSTRVI 120 GMRKTLVFYK GRAPNGRKTD WIIHEYRLQS NEHAPTQASQ PSQPPINSIL EEGWVVCRAF 180 QKPMPNQQQH RLSYSYGCIP GSYGGGGYTA VPDNYSLLLH HDNPSFAAAA ARPLMGAASA 240 LFANDNVVDH SNILSSESKL HFSDMMPPLE SPTVDGEGFV SQASSCVDVD QQAAAAGIVD 300 WNLLTSLLPP PAHQLFHHLP SASSSKNSNN ISSSGFIDDR D |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-53 | 3 | 182 | 4 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK110611 | 0.0 | AK110611.1 Oryza sativa Japonica Group cDNA clone:002-168-H04, full insert sequence. | |||
GenBank | JN634072 | 0.0 | JN634072.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650248.1 | 0.0 | NAC domain-containing protein 105 | ||||
Refseq | XP_025883308.1 | 0.0 | NAC domain-containing protein 105 | ||||
Swissprot | Q9SL41 | 7e-84 | NAC37_ARATH; NAC domain-containing protein 37 | ||||
TrEMBL | A0A0E0LQC8 | 0.0 | A0A0E0LQC8_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC08G00360.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2594 | 37 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71930.1 | 6e-83 | vascular related NAC-domain protein 7 |
Publications ? help Back to Top | |||
---|---|---|---|
|