PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G00360.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 341aa    MW: 37803.1 Da    PI: 6.3169
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G00360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.62.1e-52141481128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka....eekewyfFskrdkkyatgkrknratksgyWkat 86 
                      +ppGfrFhPt+eelv +yL++kv+++k++l ++i+e+d+y++ePwdL++       +    e++ewyfFs +d+ky++g+r+nrat++g+Wkat
  OPUNC08G00360.1  14 VPPGFRFHPTEEELVGYYLARKVASQKIDL-DIIQELDLYRIEPWDLQErckyG--GhggdEQTEWYFFSYKDRKYPSGTRTNRATAAGFWKAT 104
                      69****************************.99**************9535441..14443666****************************** PP

              NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      g+dk+vls+  +++++g++ktLvfykgrap+g+ktdW++heyrl
  OPUNC08G00360.1 105 GRDKPVLSSspSTRVIGMRKTLVFYKGRAPNGRKTDWIIHEYRL 148
                      *******99888889***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-578182IPR003441NAC domain
PROSITE profilePS5100557.4614182IPR003441NAC domain
PfamPF023651.1E-2615148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDRHQEEAGE SPCVPPGFRF HPTEEELVGY YLARKVASQK IDLDIIQELD LYRIEPWDLQ  60
ERCKYGGHGG DEQTEWYFFS YKDRKYPSGT RTNRATAAGF WKATGRDKPV LSSSPSTRVI  120
GMRKTLVFYK GRAPNGRKTD WIIHEYRLQS NEHAPTQASQ PSQPPINSIL EEGWVVCRAF  180
QKPMPNQQQH RLSYSYGCIP GSYGGGGYTA VPDNYSLLLH HDNPSFAAAA ARPLMGAASA  240
LFANDNVVDH SNILSSESKL HFSDMMPPLE SPTVDGEGFV SQASSCVDVD QQAAAAGIVD  300
WNLLTSLLPP PAHQLFHHLP SASSSKNSNN ISSSGFIDDR D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-5331824168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1106110.0AK110611.1 Oryza sativa Japonica Group cDNA clone:002-168-H04, full insert sequence.
GenBankJN6340720.0JN634072.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650248.10.0NAC domain-containing protein 105
RefseqXP_025883308.10.0NAC domain-containing protein 105
SwissprotQ9SL417e-84NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A0E0LQC80.0A0A0E0LQC8_ORYPU; Uncharacterized protein
STRINGOPUNC08G00360.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25943791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.16e-83vascular related NAC-domain protein 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]