PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G25890.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 383aa    MW: 41759.1 Da    PI: 9.3344
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G25890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.13e-11328377147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r++W++  ++ l+++v+++G+g+Wk I    +   + R+  ++k++++++
  OPUNC07G25890.1 328 RKKWSEKQEKTLLEGVQKYGKGNWKDIKMAYPdvfEDRSTVDLKDKFRNL 377
                      789*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.829323382IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-11324377IPR009057Homeodomain-like
SuperFamilySSF466891.64E-13326378IPR009057Homeodomain-like
SMARTSM007171.5E-7327380IPR001005SANT/Myb domain
PfamPF002491.2E-9328377IPR001005SANT/Myb domain
CDDcd116604.44E-21329379No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MTPADAFLIL DFLAGNRLIP HSVFTTLLAS LPSVSPHTSP RLRAGLALRA LDAVLSVSES  60
EMDAPTLMHK ARAVLADPDF APFFPQHLAA PGSADDAPAA AVAHLKRLLD VEWASLPPSA  120
LEIAAERIVG SGALHSWANA DHAQRSKLRL LVGESTAREI LDKLRRPDAS INYPATLPQV  180
DNAPKTNGAS HCAQQNDEDK SGLVKQNAKA DRPQQDSSRH QQNLAQGASN SQLKESSVTM  240
ASIRGMGPDI TGFMEEAAPR VAGQFAPDNI KNHQVTGSKH SLMERNPSAS TYEWDGSDSE  300
GKRPAAKRRL PIFERTAKPS PAAAHKTRKK WSEKQEKTLL EGVQKYGKGN WKDIKMAYPD  360
VFEDRSTVDL KDKFRNLERH LCA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0719400.0AK071940.1 Oryza sativa Japonica Group cDNA clone:J013077N22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646481.10.0uncharacterized protein LOC4344404
TrEMBLA0A0E0LQ770.0A0A0E0LQ77_ORYPU; Uncharacterized protein
STRINGOPUNC07G25890.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139982224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-11TRF-like 5