PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G25360.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 308aa    MW: 34338.7 Da    PI: 5.3429
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G25360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.53.5e-192168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd+llv++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  OPUNC07G25360.1 21 RGPWTVEEDLLLVNYIAAHGEGRWNALARCAGLKRTGKSCRLRWLNYL 68
                     89********************************************97 PP

2Myb_DNA-binding50.64.5e-1674117146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  OPUNC07G25360.1  74 RGNMTAQEQLLILELHGRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 117
                      89********************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6681668IPR017930Myb domain
SuperFamilySSF466891.57E-3019115IPR009057Homeodomain-like
SMARTSM007173.3E-162070IPR001005SANT/Myb domain
PfamPF002494.9E-172168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-222275IPR009057Homeodomain-like
CDDcd001671.73E-122368No hitNo description
PROSITE profilePS5129422.91469123IPR017930Myb domain
SMARTSM007171.9E-1473121IPR001005SANT/Myb domain
PfamPF002497.4E-1574117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-2276122IPR009057Homeodomain-like
CDDcd001676.89E-1176117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MMMARELSSE EEAAGGDELR RGPWTVEEDL LLVNYIAAHG EGRWNALARC AGLKRTGKSC  60
RLRWLNYLRP DVRRGNMTAQ EQLLILELHG RWGNRWSKIA QHLPGRTDNE IKNYWRTRVQ  120
KHAKHLNCDV NSQQFKDLMR YLWMPRLLER IHRSSQSALS DADADADADD ASCITSLLHA  180
PAPLLSSPHT PPFAMAADTT SNDSTMWQQH QAQMSIAGAP PPTTTTVTQH VVLPAAAASC  240
HQMQPDDQSF VGAAETTTCC WSESESLPGL AGLYDDVAVA LPEFDVETMP MWGAVEGDDP  300
WYTQMLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-241812124126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1034550.0AK103455.1 Oryza sativa Japonica Group cDNA clone:J033129J22, full insert sequence.
GenBankHQ8588210.0HQ858821.1 Oryza sativa Japonica Group isolate UT1319 MYB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645266.11e-175transcription factor JAMYB-like
SwissprotQ10MB43e-94MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A0E0LQ050.0A0A0E0LQ05_ORYPU; Uncharacterized protein
STRINGOPUNC07G25360.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.12e-81myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]