PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G25110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 483aa    MW: 51522.3 Da    PI: 5.6927
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G25110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.57e-39105164261
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rn+PvG+grrk+k+s
  OPUNC07G25110.1 105 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGSMRNLPVGAGRRKSKSS 164
                      7899*****************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-31102162IPR003851Zinc finger, Dof-type
PfamPF027011.1E-31107163IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.528109163IPR003851Zinc finger, Dof-type
PROSITE patternPS013610111147IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MSMDDLAASP PHPPPPESHV PPQPQPQPPE KDSCEDTADM RISEEKPCIE QELDADQTNS  60
SSLNSSSECE NQTLSNDEMT GSESKSEAAQ TEGGGSSGEK VLKKPDKILP CPRCNSMDTK  120
FCYYNNYNIN QPRHFCKSCQ RYWTAGGSMR NLPVGAGRRK SKSSTANCRS ILIPGSNLAA  180
PAGDAPLYQL SIKGDQTTTA VKFVPDSPLC NSMASVLKIG EQSKNAKPTS TAQPRNGETQ  240
TCPASGTTSD SPRNEPVNGA VSGNQNGIVG HSGVTPMHPI PCFPGPPFVY PWSPAWNGIP  300
AMAAPVCPAP AEPANSSDNG STSNVQWSIP PMMPVPGYCG PPITFPVIPS SVWPFISPWP  360
NGAWSSPWLQ PNCSVSASSP TSSSTCSDNG SPVLGKHSRD SKPQGDDKAE KHLWIPKTLR  420
IDDPDEAAKS SIWTTLGIEP GDRSMFRPFQ SKSESREQIS GAARVLQANP AALSRSQSFQ  480
ETT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1040950.0AK104095.1 Oryza sativa Japonica Group cDNA clone:001-032-E07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647890.10.0cyclic dof factor 2
TrEMBLA0A0E0LPX40.0A0A0E0LPX4_ORYPU; Uncharacterized protein
STRINGOPUNC07G25110.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143438116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.22e-77cycling DOF factor 2