PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC07G25110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 483aa MW: 51522.3 Da PI: 5.6927 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.5 | 7e-39 | 105 | 164 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rn+PvG+grrk+k+s OPUNC07G25110.1 105 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGSMRNLPVGAGRRKSKSS 164 7899*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-31 | 102 | 162 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.1E-31 | 107 | 163 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.528 | 109 | 163 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 111 | 147 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MSMDDLAASP PHPPPPESHV PPQPQPQPPE KDSCEDTADM RISEEKPCIE QELDADQTNS 60 SSLNSSSECE NQTLSNDEMT GSESKSEAAQ TEGGGSSGEK VLKKPDKILP CPRCNSMDTK 120 FCYYNNYNIN QPRHFCKSCQ RYWTAGGSMR NLPVGAGRRK SKSSTANCRS ILIPGSNLAA 180 PAGDAPLYQL SIKGDQTTTA VKFVPDSPLC NSMASVLKIG EQSKNAKPTS TAQPRNGETQ 240 TCPASGTTSD SPRNEPVNGA VSGNQNGIVG HSGVTPMHPI PCFPGPPFVY PWSPAWNGIP 300 AMAAPVCPAP AEPANSSDNG STSNVQWSIP PMMPVPGYCG PPITFPVIPS SVWPFISPWP 360 NGAWSSPWLQ PNCSVSASSP TSSSTCSDNG SPVLGKHSRD SKPQGDDKAE KHLWIPKTLR 420 IDDPDEAAKS SIWTTLGIEP GDRSMFRPFQ SKSESREQIS GAARVLQANP AALSRSQSFQ 480 ETT |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00046 | PBM | Transfer from AT5G39660 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK104095 | 0.0 | AK104095.1 Oryza sativa Japonica Group cDNA clone:001-032-E07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647890.1 | 0.0 | cyclic dof factor 2 | ||||
TrEMBL | A0A0E0LPX4 | 0.0 | A0A0E0LPX4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC07G25110.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1434 | 38 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 2e-77 | cycling DOF factor 2 |