PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC07G24850.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 949aa MW: 103916 Da PI: 6.9014 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.3 | 5.1e-17 | 371 | 462 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+kvl+ sd+++ grlvlpk +ae g lt++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ +++l OPUNC07G24850.3 371 FEKVLSASDAGRIGRLVLPKACAEPEGR------PLTIQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRIE-PGGKL 456 99********************944443......49**************9989999999***9.********************887.77777 PP EEEEE- CS B3 93 vvkvfr 98 v+++++ OPUNC07G24850.3 457 VMGFRK 462 877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.2E-25 | 363 | 472 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.76E-17 | 368 | 463 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.47E-21 | 369 | 462 | No hit | No description |
Pfam | PF02362 | 8.2E-14 | 371 | 462 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.1E-18 | 371 | 463 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.335 | 371 | 464 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.664 | 623 | 673 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.4E-11 | 628 | 670 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 949 aa Download sequence Send to blast |
MAGMAAAAAA AAAALVAVKR CMNAACGAPA PSPAGGEWRK GWPLRSGGFA VLCDKCGLAY 60 EQLVFCDIFH QKESGWRDCS FCGKRLHCGC IASKNSFDLL DSGGVQCVTC IKNSAVQSVP 120 SPVVPKLFSS QNNQRLFGKS DDLLSGRPLE TSSLMVDARN DDLTIIAKNS LPFMVKNIET 180 GQSSNILRQK ELENGARQIK WELPTLSIGD MGRIPFLTRS QSALESPQCA RRDENKDPTT 240 ESTTSESLSE ACLNMSLGIA SNGNKLEATS TVERPMLSPT TGFPEGRELT TALSPFQHAQ 300 RARHFLTRPP RVGEGAVFDP TKDMLPHLRV ARPPAEGRGR NQLLPRYWPR ITDQELQQIS 360 GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEPEGRPL TIQDAKGKEW HFQFRFWPNN 420 NSRMYVLEGV TPCIQSLQLQ AGDTVTFSRI EPGGKLVMGF RKATNTVSLP DSQISAIANG 480 SVLGDTLFSS TNENLAIVSG YSGFLQSIKG AADLHTSSLY DHHVNSADGD VSWLKTDKFG 540 SRPDEGSLQF LKRGRNIGSK SRRLSMDAEE AWELKLYWDE VQELLRPAPT AKPTVVMIED 600 YEIEEYDEPP VFAKRSIFTI RSTGEQDQWI QCDDCSKWRR LPLNVIVASK WTCADNTIDQ 660 KSCSCSAPEE LTPKELHIVL QQYEDMRRRR NSFGFKQNIP EMDAVSLDAL ATAAVFGDVG 720 NQGSPSVATT TKHPRHRPGC TCIVCIQPPS GKGPKHNPAC TCNVCMTVRR RFKTLMMRKK 780 QRQSEREEAE ASKKIAWMNR DEPEGSSLSR SPQTVDTTRD GDVTMFDKVD INKGHIDLNF 840 HPTAVREEER HGGQPRVSMV TLLEVANRPL ENYMKQNGLM SLAGEQGSSS TCTGAATVPQ 900 PAPVESEERT SNNDGGRVVT AEQPESMAVD EAGDNQADKA AGDSAAALA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 9e-58 | 349 | 465 | 2 | 126 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 768 | 779 | RRRFKTLMMRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK101356 | 0.0 | AK101356.1 Oryza sativa Japonica Group cDNA clone:J033035A04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646777.1 | 0.0 | B3 domain-containing protein Os07g0679700 isoform X1 | ||||
Swissprot | Q6Z3U3 | 0.0 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A0E0LPU0 | 0.0 | A0A0E0LPU0_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC07G24850.3 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6519 | 37 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-171 | HSI2-like 1 |
Publications ? help Back to Top | |||
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