PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G24850.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 931aa    MW: 102436 Da    PI: 6.7978
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G24850.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.35e-17353444198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                      f+kvl+ sd+++ grlvlpk +ae  g        lt++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  +++l
  OPUNC07G24850.2 353 FEKVLSASDAGRIGRLVLPKACAEPEGR------PLTIQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRIE-PGGKL 438
                      99********************944443......49**************9989999999***9.********************887.77777 PP

                      EEEEE- CS
               B3  93 vvkvfr 98 
                      v+++++
  OPUNC07G24850.2 439 VMGFRK 444
                      877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.0E-25345454IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.62E-17350445IPR015300DNA-binding pseudobarrel domain
CDDcd100172.39E-21351444No hitNo description
SMARTSM010199.1E-18353445IPR003340B3 DNA binding domain
PROSITE profilePS5086311.335353446IPR003340B3 DNA binding domain
PfamPF023627.9E-14353444IPR003340B3 DNA binding domain
PROSITE profilePS5105014.664605655IPR011124Zinc finger, CW-type
PfamPF074961.4E-11610652IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 931 aa     Download sequence    Send to blast
MRCMNAACGA PAPSPAGGEW RKGWPLRSGG FAVLCDKCGL AYEQLVFCDI FHQKESGWRD  60
CSFCGKRLHC GCIASKNSFD LLDSGGVQCV TCIKNSAVQS VPSPVVPKLF SSQNNQRLFG  120
KSDDLLSGRP LETSSLMVDA RNDDLTIIAK NSLPFMVKNI ETGQSSNILR QKELENGARQ  180
IKWELPTLSI GDMGRIPFLT RSQSALESPQ CARRDENKDP TTESTTSESL SEACLNMSLG  240
IASNGNKLEA TSTVERPMLS PTTGFPEGRE LTTALSPFQH AQRARHFLTR PPRVGEGAVF  300
DPTKDMLPHL RVARPPAEGR GRNQLLPRYW PRITDQELQQ ISGDSNSTIV PLFEKVLSAS  360
DAGRIGRLVL PKACAEPEGR PLTIQDAKGK EWHFQFRFWP NNNSRMYVLE GVTPCIQSLQ  420
LQAGDTVTFS RIEPGGKLVM GFRKATNTVS LPDSQISAIA NGSVLGDTLF SSTNENLAIV  480
SGYSGFLQSI KGAADLHTSS LYDHHVNSAD GDVSWLKTDK FGSRPDEGSL QFLKRGRNIG  540
SKSRRLSMDA EEAWELKLYW DEVQELLRPA PTAKPTVVMI EDYEIEEYDE PPVFAKRSIF  600
TIRSTGEQDQ WIQCDDCSKW RRLPLNVIVA SKWTCADNTI DQKSCSCSAP EELTPKELHI  660
VLQQYEDMRR RRNSFGFKQN IPEMDAVSLD ALATAAVFGD VGNQGSPSVA TTTKHPRHRP  720
GCTCIVCIQP PSGKGPKHNP ACTCNVCMTV RRRFKTLMMR KKQRQSEREE AEASKKIAWM  780
NRDEPEGSSL SRSPQTVDTT RDGDVTMFDK VDINKGHIDL NFHPTAVREE ERHGGQPRVS  840
MVTLLEVANR PLENYMKQNG LMSLAGEQGS SSTCTGAATV PQPAPVESEE RTSNNDGGRV  900
VTAEQPESMA VDEAGDNQAD KAAGDSAAAL A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-573314472126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1750761RRRFKTLMMRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1013560.0AK101356.1 Oryza sativa Japonica Group cDNA clone:J033035A04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646777.10.0B3 domain-containing protein Os07g0679700 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A0E0LPU00.0A0A0E0LPU0_ORYPU; Uncharacterized protein
STRINGOPUNC07G24850.30.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-171HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]