PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G24850.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 910aa    MW: 99847.9 Da    PI: 7.0493
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G24850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.44.8e-17371462198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                      f+kvl+ sd+++ grlvlpk +ae  g        lt++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  +++l
  OPUNC07G24850.1 371 FEKVLSASDAGRIGRLVLPKACAEPEGR------PLTIQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRIE-PGGKL 456
                      99********************944443......49**************9989999999***9.********************887.77777 PP

                      EEEEE- CS
               B3  93 vvkvfr 98 
                      v+++++
  OPUNC07G24850.1 457 VMGFRK 462
                      877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.7E-25363472IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-17368463IPR015300DNA-binding pseudobarrel domain
CDDcd100172.29E-21369462No hitNo description
PfamPF023627.7E-14371462IPR003340B3 DNA binding domain
SMARTSM010199.1E-18371463IPR003340B3 DNA binding domain
PROSITE profilePS5086311.335371464IPR003340B3 DNA binding domain
PROSITE profilePS5105014.664585635IPR011124Zinc finger, CW-type
PfamPF074961.3E-11590632IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 910 aa     Download sequence    Send to blast
MAGMAAAAAA AAAALVAVKR CMNAACGAPA PSPAGGEWRK GWPLRSGGFA VLCDKCGLAY  60
EQLVFCDIFH QKESGWRDCS FCGKRLHCGC IASKNSFDLL DSGGVQCVTC IKNSAVQSVP  120
SPVVPKLFSS QNNQRLFGKS DDLLSGRPLE TSSLMVDARN DDLTIIAKNS LPFMVKNIET  180
GQSSNILRQK ELENGARQIK WELPTLSIGD MGRIPFLTRS QSALESPQCA RRDENKDPTT  240
ESTTSESLSE ACLNMSLGIA SNGNKLEATS TVERPMLSPT TGFPEGRELT TALSPFQHAQ  300
RARHFLTRPP RVGEGAVFDP TKDMLPHLRV ARPPAEGRGR NQLLPRYWPR ITDQELQQIS  360
GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEPEGRPL TIQDAKGKEW HFQFRFWPNN  420
NSRMYVLEGV TPCIQSLQLQ AGDTVTFSRI EPGGKLVMGF RKATNTVSLP DSQISAIANG  480
SVLGDTLFSS TNENLAITDK FGSRPDEGSL QFLKRGRNIG SKSRRLSMDA EEAWELKLYW  540
DEVQELLRPA PTAKPTVVMI EDYEIEEYDE PPVFAKRSIF TIRSTGEQDQ WIQCDDCSKW  600
RRLPLNVIVA SKWTCADNTI DQKSCSCSAP EELTPKELHI VLQQYEDMRR RRNSFGFKQN  660
IPEMDAVSLD ALATAAVFGD VGNQGSPSVA TTTKHPRHRP GCTCIVCIQP PSGKGPKHNP  720
ACTCNVCMTV RRRFKTLMMR KKQRQSEREE AEASKKIAWM NRDEPEGSSL SRSPQTVDTT  780
RDGDVTMFDK VDINKGHIDL NFHPTAVREE ERHGGQPRVS MVTLLEVANR PLENYMKQNG  840
LMSLAGEQGS SSTCTGAATV PQPAPVESEE RTSNNDGGRV VTAEQPESMA VDEAGDNQAD  900
KAAGTAAGEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A9e-583494652126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1730741RRRFKTLMMRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1013560.0AK101356.1 Oryza sativa Japonica Group cDNA clone:J033035A04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646778.10.0B3 domain-containing protein Os07g0679700 isoform X2
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A0E0LPT80.0A0A0E0LPT8_ORYPU; Uncharacterized protein
STRINGOPUNC07G24850.30.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-171HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]