PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G21310.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1041aa    MW: 116523 Da    PI: 6.4344
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G21310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.42.2e-56211372118
             CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      l+ ++rwl+++ei++iL n++k++++ e+++rp sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++fq
  OPUNC07G21310.1  21 LEAQNRWLRPTEICHILSNYKKFSIAPEPPNRPASGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQ 114
                      5679****************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylevk 118
                      rr+ywlLee + +ivlvhylevk
  OPUNC07G21310.1 115 RRTYWLLEEGFMNIVLVHYLEVK 137
                      ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143779.84616142IPR005559CG-1 DNA-binding domain
SMARTSM010762.5E-7619137IPR005559CG-1 DNA-binding domain
PfamPF038593.4E-5022136IPR005559CG-1 DNA-binding domain
SuperFamilySSF812963.32E-13461532IPR014756Immunoglobulin E-set
SuperFamilySSF484031.71E-15633739IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.4E-16638740IPR020683Ankyrin repeat-containing domain
CDDcd002044.93E-12639737No hitNo description
PROSITE profilePS5029716.626645739IPR020683Ankyrin repeat-containing domain
PfamPF127962.4E-6651740IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.137678710IPR002110Ankyrin repeat
SMARTSM002480.34678707IPR002110Ankyrin repeat
SMARTSM00248670717746IPR002110Ankyrin repeat
SMARTSM000150.36851873IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.773852881IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.33E-7853902IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.0056853872IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0096874896IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.67875899IPR000048IQ motif, EF-hand binding site
PfamPF006122.4E-4877896IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1041 aa     Download sequence    Send to blast
MAEVRKYGLP NQPPDIPQIL LEAQNRWLRP TEICHILSNY KKFSIAPEPP NRPASGSLFL  60
FDRKILRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYWL  120
LEEGFMNIVL VHYLEVKGKN NFSRVASKVS AVLKKLKRVQ DYLMLIVLHA QTLSLVRASV  180
SKEKFGATDN CRASSRYHPF VEMQQPVDGV MMNSMLGVSA PSAGYHGEMQ TTTANSDNHF  240
ATHYDIAGVF NEAGAGLRGI SKTLHDSMRF GEPYPEYSAE FMEPALYASS ATMESNNLDD  300
NSRLETFMSE ALYTNNLTQK EADALSAAGI MSSQVENNSY TDGIRYPLLK QSSLDLFKIE  360
PDGLKKFDSF SRWMSSELPE VADLDIKSSS DAFWSSTETV NVADGTSIPI NEQLDAFAVS  420
PSLSQDQLFS IIDVSPSYAC TGSRNKVELY VDLSFGNHLV QVLITGTFLA NKEHVDNCKW  480
SCMFGDVEVP AEVLAHGSLR CYTPVHLSGR VPFYVTCSNR VACSEVREFE FRDSDARQMD  540
TSDPHTTGIN EMHLHIRLEK LLSLGQDDYE KYVMSDGKEK SEIINTISSL MLDDKCLNQA  600
VPLDEKEVST ARDQNIEKLV KEKLYCWLVH KVHDEDKGPN VLGKEGQGVI HLVAALGYDW  660
AIRPIITAGV KVNFRDARGW TALHWAASCG RELTVGALIA NGAESGLLTD PTPQFPAGRT  720
AADLASENGH KGIAGFLAES ALTSHLSALT LKESKDGNVK EICGLGGTED FAESSSAQLA  780
YRDSQAESLK DSLSAVRKST QAAARIFQAF RVESFHRKKV VEYGDDDCGL SDERTLSLVS  840
IKSAKPGQND GAHSAAVRIQ NKFRGWKGRK EFMIIRQKIV KIQAHVRGHQ VRKSYRKIVW  900
SVGIVEKIIL RWRRKRRGLR GFQPVKQLEG PSPIQQIEGP SQIQPAKEEE EDEYDYLKDG  960
RKQAEGRLQR ALARVKSMTQ YPEAREQYSR IANRVTELQE PETMMIQDDM QNDGAIADGG  1020
DFMAELEELC GDEDAPMPTI L
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:11925432). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance (PubMed:19270186). Involved in freezing tolerance in association with CAMTA2 and CAMTA3. Contributes together with CAMTA2 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved in drought stress responses by regulating several drought-responsive genes (PubMed:23547968). Involved in auxin signaling and responses to abiotic stresses (PubMed:20383645). Activates the expression of the V-PPase proton pump AVP1 in pollen (PubMed:14581622). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:11925432, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:23547968, ECO:0000269|PubMed:23581962, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by UVB, wounding, ethylene and methyl jasmonate (PubMed:12218065). Induced by salt stress and heat shock (PubMed:12218065, PubMed:20383645). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084610.0AK108461.1 Oryza sativa Japonica Group cDNA clone:002-143-D08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647012.10.0calmodulin-binding transcription activator 1 isoform X1
SwissprotQ9FY740.0CMTA1_ARATH; Calmodulin-binding transcription activator 1
TrEMBLA0A0E0LNI80.0A0A0E0LNI8_ORYPU; Uncharacterized protein
STRINGOPUNC07G21310.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.30.0ethylene induced calmodulin binding protein