PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC07G20890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 348aa MW: 37821.3 Da PI: 4.4554 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.2 | 2.4e-19 | 110 | 160 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+G+r+++ +g+W+AeIrdp++ r++lg+fgtaeeAa a++ +++++g OPUNC07G20890.1 110 TRYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFGTAEEAAMAYDVEARRIRG 160 68********.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.67E-29 | 110 | 167 | No hit | No description |
Pfam | PF00847 | 2.3E-12 | 110 | 160 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.2E-36 | 111 | 174 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.749 | 111 | 168 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-21 | 111 | 169 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-31 | 111 | 169 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 112 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 134 | 150 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MCGGSILGDL YSPVRRTVNA SDLWGDTGKG KDGGDSLKRK GSSWDFDVDC DDDDDDFEAD 60 FEEFEDDSGD DDDDVGFGHD DQESDMNSLK LAGFSATKLG GLGSSRKRKT RYRGIRQRPW 120 GKWAAEIRDP RKGVRVWLGT FGTAEEAAMA YDVEARRIRG KKAKVNFPDP AAATAAPKRP 180 RRSSASTKHS SQPQRQLKAK SSSSSPSPVS MNVSDGVSKS NNNRVSSAGS STDDAAAIDD 240 AVKLELLSET NPSLPLPMAA AWLDAFELND LDGSRCKDDA AGAFDHQIHK AEAVVADDFA 300 FYDPSYMQLG YLDQGNSYEN IDALFGGEAV NIGGLWSFDD MPMEFRAY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-20 | 112 | 168 | 6 | 63 | ATERF1 |
3gcc_A | 2e-20 | 112 | 168 | 6 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 109 | SRKRKT |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061047 | 0.0 | AK061047.1 Oryza sativa Japonica Group cDNA clone:006-205-F01, full insert sequence. | |||
GenBank | AK067060 | 0.0 | AK067060.1 Oryza sativa Japonica Group cDNA clone:J013090P08, full insert sequence. | |||
GenBank | AK109360 | 0.0 | AK109360.2 Oryza sativa Japonica Group cDNA clone:006-206-B03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647923.1 | 1e-151 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A0E0LND6 | 0.0 | A0A0E0LND6_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC07G20890.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14560 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 7e-34 | ethylene-responsive element binding protein |