PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC07G20270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YA | ||||||||
Protein Properties | Length: 235aa MW: 25477.2 Da PI: 9.629 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.8 | 7.8e-33 | 81 | 137 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq Rakle+++kl k+rkpylheSRh+hA++R+RgsgGrF OPUNC07G20270.1 81 EEPIFVNAKQYHAILRRRQIRAKLEAQNKL-VKGRKPYLHESRHRHAMKRARGSGGRF 137 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.5E-37 | 79 | 140 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.238 | 80 | 140 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 8.6E-28 | 82 | 137 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.4E-24 | 83 | 105 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 85 | 105 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.4E-24 | 114 | 137 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MKQLGHKIYD QDSPSSDSGQ SHQEESAMND SSPNEQHTST QSADAYYGGV LTGYASHAIV 60 HPQQNGTANS RVPLPVEPAA EEPIFVNAKQ YHAILRRRQI RAKLEAQNKL VKGRKPYLHE 120 SRHRHAMKRA RGSGGRFLNT KQLEEQKQQE EEAASGGASS GNRTCLQNGT GCAPSASAPS 180 EIASVSTSRE ILGNHEQGHL PSAGFLPAMS FRAQNGGDSS KLVANAIHQR VSMMR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-23 | 81 | 142 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 130 | RHRHAMKRAR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288033 | 0.0 | AB288033.1 Oryza sativa Japonica Group OsHAP2G mRNA for HAP2 subunit of HAP complex, complete cds. | |||
GenBank | AK101684 | 0.0 | AK101684.1 Oryza sativa Japonica Group cDNA clone:J033058N01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646559.1 | 1e-136 | nuclear transcription factor Y subunit A-4 | ||||
Refseq | XP_015646560.1 | 1e-136 | nuclear transcription factor Y subunit A-4 | ||||
Refseq | XP_015646561.1 | 1e-136 | nuclear transcription factor Y subunit A-4 | ||||
Refseq | XP_015646562.1 | 1e-136 | nuclear transcription factor Y subunit A-4 | ||||
Swissprot | Q9LNP6 | 2e-45 | NFYA8_ARATH; Nuclear transcription factor Y subunit A-8 | ||||
TrEMBL | A0A0E0LN51 | 1e-173 | A0A0E0LN51_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC07G20270.1 | 1e-174 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1373 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17590.4 | 1e-33 | nuclear factor Y, subunit A8 |
Publications ? help Back to Top | |||
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