PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC07G19460.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 237aa MW: 24421.7 Da PI: 6.7172

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC07G19460.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	91.8	8.2e-29	18	118	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C+++Cvl+p++ +++q +++ +v+k+FG++ ++++l+a+pe +r ++++sl+yeA r+ +Pv Gavg++++++++l+q OPUNC07G19460.1 18 SCNGCRVLRKGCSEGCVLRPCLqwidgAEAQGHATVFVAKFFGRAGLMSFLTAVPEPQRAAVFQSLLYEAAGRTINPVGGAVGLLSAGSWHLCQ 111 6*******************9999888999************************************************************ PP DUF260 90 lkaelal 96 ++++++l OPUNC07G19460.1 112 AAVDTVL 118 *999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.4	17	123	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.5E-25	18	116	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MAELEVEAVS VWATSAMSCN GCRVLRKGCS EGCVLRPCLQ WIDGAEAQGH ATVFVAKFFG 60 RAGLMSFLTA VPEPQRAAVF QSLLYEAAGR TINPVGGAVG LLSAGSWHLC QAAVDTVLRG 120 GGIQPLPDQV DAAAGGRDVF ASTGRRAVGG CSTFSTAKRS TMTTKNPGTV HDAAAAPQPE 180 PSCDLGLWLS PCSPPAPGDR RSGGRRAGTP SMNSEGSITT CGDGAGEREP ELLNLFV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069813	0.0	AK069813.1 Oryza sativa Japonica Group cDNA clone:J023030F23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015647207.1	1e-138	LOB domain-containing protein 37
Swissprot	Q9FN11	1e-67	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A0E0LMV4	1e-170	A0A0E0LMV4_ORYPU; Uncharacterized protein
STRING	OPUNC07G19440.1	1e-171	(Oryza punctata)
STRING	OPUNC07G19460.1	1e-171	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	5e-70	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]