PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC07G19440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 237aa MW: 24421.7 Da PI: 6.7172 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91.8 | 8.2e-29 | 18 | 118 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C+++Cvl+p++ +++q +++ +v+k+FG++ ++++l+a+pe +r ++++sl+yeA r+ +Pv Gavg++++++++l+q OPUNC07G19440.1 18 SCNGCRVLRKGCSEGCVLRPCLqwidgAEAQGHATVFVAKFFGRAGLMSFLTAVPEPQRAAVFQSLLYEAAGRTINPVGGAVGLLSAGSWHLCQ 111 6*********************9999888999************************************************************** PP DUF260 90 lkaelal 96 ++++++l OPUNC07G19440.1 112 AAVDTVL 118 *999876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.4 | 17 | 123 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.5E-25 | 18 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 237 aa Download sequence Send to blast |
MAELEVEAVS VWATSAMSCN GCRVLRKGCS EGCVLRPCLQ WIDGAEAQGH ATVFVAKFFG 60 RAGLMSFLTA VPEPQRAAVF QSLLYEAAGR TINPVGGAVG LLSAGSWHLC QAAVDTVLRG 120 GGIQPLPDQV DAAAGGRDVF ASTGRRAVGG CSTFSTAKRS TMTTKNPGTV HDAAAAPQPE 180 PSCDLGLWLS PCSPPAPGDR RSGGRRAGTP SMNSEGSITT CGDGAGEREP ELLNLFV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK069813 | 0.0 | AK069813.1 Oryza sativa Japonica Group cDNA clone:J023030F23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647207.1 | 1e-138 | LOB domain-containing protein 37 | ||||
Swissprot | Q9FN11 | 1e-67 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | A0A0E0LMV4 | 1e-170 | A0A0E0LMV4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC07G19440.1 | 1e-171 | (Oryza punctata) | ||||
STRING | OPUNC07G19460.1 | 1e-171 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4084 | 36 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67420.1 | 5e-70 | LOB domain-containing protein 37 |
Publications ? help Back to Top | |||
---|---|---|---|
|