PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC07G19260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HRT-like | ||||||||
Protein Properties | Length: 621aa MW: 68652.6 Da PI: 9.859 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 58.2 | 1.4e-18 | 310 | 339 | 1 | 30 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CGv+ledGs C ++Pv+gRKRCe HKG+R OPUNC07G19260.1 310 VCGVMLEDGSSCLDSPVQGRKRCELHKGRR 339 7****************************9 PP | |||||||
2 | HRT-like | 50.9 | 2.7e-16 | 583 | 612 | 1 | 30 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG++ dGs+Ck+qP+ gRKRC+ HKG+R OPUNC07G19260.1 583 ICGARALDGSPCKNQPIAGRKRCAMHKGQR 612 8****************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00465 | 2.7E-4 | 73 | 182 | IPR000305 | GIY-YIG nuclease superfamily |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:0097100 | Molecular Function | supercoiled DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 621 aa Download sequence Send to blast |
MPAASAAIPA RLKREDYPRT KHDSLFSPWK VLVGPSDWED HVAGKEGVQR YRVLNLPENF 60 PGLYELGVAR ASDEGIRARR WNGSGGGVVV VYLGQADSVR ARLQQYGRSG SHLDAGNPPP 120 SAGKAEMYPP ATTGNGLFRE VFARGYSLVF RCALMGNKQE AEKTEARLLR VFDYGWNKLQ 180 NGACRREEIL IKLEQGAVNN RSSLLSRVRH FKQEVFREKA GIKISRNGSV DVSSGIMKHM 240 LPRIRRFVGF RPQLVNYGDN VNKEIGIRWK NTSEGNSYGK QARRSSEGYI VKRVNVIKRR 300 TMSEQDSNNV CGVMLEDGSS CLDSPVQGRK RCELHKGRRL GRIRVNPKGS FYSYSCQVEI 360 PVVESIPPLT ENESKSDQAQ QTSELSKLLP ATVKESSRPR YSFEAKEMKT GEAPIEDGTH 420 ETSGVVDICE AKKSDNSACT NKIISGSKKC QLHNGCKAEE FVSPRVIDLL QNEEKVHSVT 480 GDKLSGEEIC HGKNQSQENQ PSGRMWFELL NLQNSTSTLS SKGQGRQRRV TSDVAAICGA 540 LTNNGCRETI PMAGRERCDA HEGIKVTDAY SVPFSGSSGW PSICGARALD GSPCKNQPIA 600 GRKRCAMHKG QRACRTPQST K |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102792 | 0.0 | AK102792.1 Oryza sativa Japonica Group cDNA clone:J033107P15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644815.1 | 0.0 | protein EFFECTOR OF TRANSCRIPTION 2 | ||||
TrEMBL | A0A0E0LMT3 | 0.0 | A0A0E0LMT3_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC07G19260.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7948 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 1e-69 | effector of transcription2 |