PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC07G18930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 240aa MW: 26102.2 Da PI: 7.5706 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.1 | 7.3e-19 | 59 | 112 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq+e Le F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k OPUNC07G18930.1 59 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHK 112 45589***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 116.3 | 1.8e-37 | 59 | 149 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrls+eqv++LE sF+ee+kLe+ rKv+la+eLgl+p+qvavWFqnrRAR+k+k lE+++++Lk+a+da ++++Le+ev +L+e+l OPUNC07G18930.1 59 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDAAILHKCHLENEVLRLKERLV 149 9**************************************************************************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.293 | 54 | 114 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.0E-16 | 56 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 9.7E-17 | 57 | 118 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.89E-15 | 59 | 114 | No hit | No description |
Pfam | PF00046 | 4.0E-16 | 59 | 112 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-18 | 59 | 112 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.8E-5 | 85 | 94 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 89 | 112 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.8E-5 | 94 | 110 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDRYGEKQQQ MFASYVDASL LAASGAVQAE RPRARRRRRR GARCGGGGGG GEVDGGDPKK 60 RRLSDEQVEM LELSFREERK LETGRKVHLA SELGLDPKQV AVWFQNRRAR HKSKLLEEEF 120 SKLKHAHDAA ILHKCHLENE VLRLKERLVV AEEEVRRLRS AAGSHTASGE GGDIMGLGGG 180 ACVAGSPSSS FSTGTCQPQS FGCGGGGGDH LGDDDLVYVP EYGGYADNSV VEWFSLYGLI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 30 | 39 | RPRARRRRRR |
2 | 34 | 42 | RRRRRRGAR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121889 | 0.0 | AK121889.1 Oryza sativa Japonica Group cDNA clone:J033105B17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646179.1 | 1e-123 | homeobox-leucine zipper protein HOX14 | ||||
Swissprot | A2YN17 | 1e-124 | HOX14_ORYSI; Homeobox-leucine zipper protein HOX14 | ||||
TrEMBL | A0A0E0LMP1 | 1e-173 | A0A0E0LMP1_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC07G18930.1 | 1e-174 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2006 | 38 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 4e-32 | homeobox protein 40 |