PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G17640.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 937aa    MW: 103868 Da    PI: 8.2472
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G17640.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.17.9e-19453552198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e+
  OPUNC07G17640.2 453 FEKMLSASDAGRIGRLVLPKKCAEAYfpAISQAEGLPLKVQDATGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEG 544
                      89**************************777788889***************9989999999***9.********************987.777 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +lv+++++
  OPUNC07G17640.2 545 KLVMGFRK 552
                      77777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280137157IPR007087Zinc finger, C2H2
Gene3DG3DSA:2.40.330.102.2E-29449554IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-19450552IPR015300DNA-binding pseudobarrel domain
CDDcd100175.70E-22451552No hitNo description
SMARTSM010195.7E-21453553IPR003340B3 DNA binding domain
PROSITE profilePS5086311.251453554IPR003340B3 DNA binding domain
PfamPF023628.1E-16453552IPR003340B3 DNA binding domain
PROSITE profilePS5105014.17708758IPR011124Zinc finger, CW-type
PfamPF074964.8E-11713755IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 937 aa     Download sequence    Send to blast
MSSPAQPPPT RPPVAAPSPS LSAAAPISVQ PPPLQPKPPP PPPPQPPHAV ISVGPPPTPQ  60
QQQQQLQGPP GHAPPQQRPR ICFNTHCKDP KSDGPRRRGW RLRNSDFAEL CDRCYHSFEH  120
GGFCETFHLE VAGWRNCESC GKRLHCGCIV SVHAFVHLDA GGVECVMCAR KSHAAMAPSQ  180
IWSSSMHMAQ NVADRKENFV KSWRPPAGQF SSQWRQNNMW SMSTMQSDLQ QRLAFEFDRP  240
SGSEKLLPGR TFIHAHEKKF DDMHDRPTTP AGMNQIMRER YANGHTQHTT LDPTYAYTIY  300
HREGTNPNLH DHSHHAGEND HLTARKGVTP DPCSSVSTTF KLDSHHPSIL KDDPSALPAG  360
LSPNFSSANG PKDHIRIGPT QQQQQQMASS SLQKQFYSHS VIDNDFQAQL RNGRPRMDAK  420
ARSQLLPRYW PRITDQELQH LSGDSNSVIT PLFEKMLSAS DAGRIGRLVL PKKCAEAYFP  480
AISQAEGLPL KVQDATGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRI  540
DPEGKLVMGF RKATNLSAEQ DQPTKPANGV PPPPEANNKV AVPDSSPNAA VPRPIKVNTE  600
SKSSSPVEQA TACKIDKGAL PQKEGPGTSS SSPVPVKRKA TSVGPKIKRF RMDSEESMEL  660
KITWEEAQEL LRPPPKAPSI VVVDGHEFEE YEEPPILGRR TYFVTDQSGE NHQWAQCEDC  720
SKWRKLPVDA LLPSKWTCSD NKWDSERSSC DSAQEINMEE LAEMIPIKPD GLDTLANLAI  780
LGEGESLPSQ PTTRHPRHRP GCSCIVCIQP PSGKGPKHKQ TCTCNVCMTV RRRFRTLMMR  840
REKRQQSEKD SGAPRRKEPG QSSEPVPQSG SSAPPASSSS PPQKADTNGE GPEDMSIDNK  900
RTSSPVKNQI DLNSQPERED EQSPKSDATR LLRDNPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C4e-644315551125B3 domain-containing transcription repressor VAL1
5yzz_C4e-644315551125B3 domain-containing transcription repressor VAL1
5z00_C4e-644315551125B3 domain-containing transcription repressor VAL1
5z00_G4e-644315551125B3 domain-containing transcription repressor VAL1
5z00_K4e-644315551125B3 domain-containing transcription repressor VAL1
5z00_M4e-644315551125B3 domain-containing transcription repressor VAL1
6j9a_A4e-644315552126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411990.0AK241199.1 Oryza sativa Japonica Group cDNA, clone: J065121L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647113.10.0B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A0E0LM830.0A0A0E0LM83_ORYPU; Uncharacterized protein
STRINGOPUNC07G17640.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-140HSI2-like 1