PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC07G14510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 358aa MW: 34482.2 Da PI: 8.0716 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.8 | 5.6e-39 | 41 | 100 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +al+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+s+ OPUNC07G14510.1 41 AEALRCPRCDSANTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRSR 100 57899****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-31 | 37 | 98 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.7E-33 | 43 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.385 | 44 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 46 | 82 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MAGAGGAATA AGGGGGAVAA GRSGGGGGAA AAAAGAPDPR AEALRCPRCD SANTKFCYYN 60 NYSLSQPRHF CKACKRYWTR GGTLRNVPVG GGCRKNKRSR SGAGAPGGAG RSGSGGGAAA 120 VAAVSSAGGA GTSPAAAASL ALPQPGSLPS LSSALGLTGS TSLASLLLGS GGSGGDHLGL 180 FQAMQSVVSD AAAFEMHQHH QSQVDHLLGL GYGAAAAAGA QIQVSKPWLH DGGATGGAAG 240 LLDGFYAPLL SGSIVPGLEE LQVKAEATTG DHQQKSSAAG EQSWDLPTPS SSNVEASIIA 300 SDALMAAAAA SMNPAVSTTS STAPSAQSLL YWGNSGIGSA AAAWPDLANC GSSIATLF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003815 | 0.0 | AP003815.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1163_G04. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647864.1 | 1e-133 | dof zinc finger protein DOF5.4 | ||||
TrEMBL | A0A0E0LL42 | 0.0 | A0A0E0LL42_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC07G14510.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8895 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 7e-35 | TARGET OF MONOPTEROS 6 |