PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC07G14360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | SBP | ||||||||
Protein Properties | Length: 219aa MW: 22139.3 Da PI: 10.5196 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 104.2 | 9.8e-33 | 110 | 190 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTE...EEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgl...eqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C +dlsea +y+rrhkvC++hsk pvvlv+gl +++ C +fhel+efD++krsCrrrLa+hnerrrk++a OPUNC07G14360.1 110 RCQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLpptKKKICSDHDQFHELTEFDDAKRSCRRRLAGHNERRRKSAA 190 6***********************************96444899**********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.3E-25 | 103 | 175 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 24.863 | 108 | 188 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.57E-29 | 109 | 192 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.4E-24 | 111 | 187 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MDRKDKARKN SSSSSSAASM AALAAAAAAG DGGAALPSPM EEDKKPRLAA SSLVPVAGGV 60 GGGSSSSASA AAGASSSSSS SSVAAAARRG AGRAGGGAPA SGGGGGGGPR CQVERCGVDL 120 SEAGRYNRRH KVCQTHSKEP VVLVAGLPPT KKKICSDHDQ FHELTEFDDA KRSCRRRLAG 180 HNERRRKSAA DTAHGENCRH ADQDGRSHQG TGNPPFQIR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-27 | 102 | 187 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005186 | 1e-155 | AP005186.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0430F03. | |||
GenBank | AP014963 | 1e-155 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 1e-155 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. | |||
GenBank | LT159950 | 1e-155 | LT159950.1 Oryza sativa Japonica Group GLW7 gene for Large Grain 7, cultivar GP507. | |||
GenBank | LT159951 | 1e-155 | LT159951.1 Oryza sativa Japonica Group GLW7 gene for Large Grain 7, cultivar GP678. | |||
GenBank | LT159952 | 1e-155 | LT159952.1 Oryza sativa Japonica Group GLW7 gene for Large Grain 7, cultivar GP563. | |||
GenBank | LT159953 | 1e-155 | LT159953.1 Oryza sativa Indica Group GLW7 gene for Large Grain 7, cultivar GP553. | |||
GenBank | LT159954 | 1e-155 | LT159954.1 Oryza sativa Japonica Group GLW7 gene for Large Grain 7, cultivar GP112. | |||
GenBank | LT159955 | 1e-155 | LT159955.1 Oryza sativa Japonica Group GLW7 gene for Large Grain 7, cultivar GP07. | |||
GenBank | LT159956 | 1e-155 | LT159956.1 Oryza sativa Japonica Group GLW7 gene for Large Grain 7, cultivar HP111. | |||
GenBank | LT159957 | 1e-155 | LT159957.1 Oryza sativa Japonica Group GLW7 gene for Large Grain 7, cultivar HP135. | |||
GenBank | LT159958 | 1e-155 | LT159958.1 Oryza sativa Japonica Group GLW7 gene for Large Grain 7, cultivar HP163. | |||
GenBank | LT159959 | 1e-155 | LT159959.1 Oryza sativa Indica Group GLW7 gene for Large Grain 7, cultivar GP16. | |||
GenBank | LT159960 | 1e-155 | LT159960.1 Oryza sativa Indica Group GLW7 gene for Large Grain 7, cultivar GP81. | |||
GenBank | LT159961 | 1e-155 | LT159961.1 Oryza sativa Japonica Group GLW7 gene for Large Grain 7, cultivar GP39. | |||
GenBank | LT159962 | 1e-155 | LT159962.1 Oryza sativa Japonica Group GLW7 gene for Large Grain 7, cultivar GP26. | |||
GenBank | LT159963 | 1e-155 | LT159963.1 Oryza sativa Indica Group GLW7 gene for Large Grain 7, cultivar GP30. | |||
GenBank | LT159964 | 1e-155 | LT159964.1 Oryza sativa Indica Group GLW7 gene for Large Grain 7, cultivar GLA4. | |||
GenBank | LT159965 | 1e-155 | LT159965.1 Oryza sativa Indica Group GLW7 gene for Large Grain 7, cultivar GP538. | |||
GenBank | LT159966 | 1e-155 | LT159966.1 Oryza sativa Indica Group GLW7 gene for Large Grain 7, cultivar GP531. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645415.1 | 5e-75 | squamosa promoter-binding-like protein 13 | ||||
Swissprot | Q6Z461 | 5e-76 | SPL13_ORYSJ; Squamosa promoter-binding-like protein 13 | ||||
TrEMBL | A0A0E0LL21 | 1e-152 | A0A0E0LL21_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC07G14360.1 | 1e-153 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8524 | 32 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 4e-29 | squamosa promoter binding protein-like 4 |