PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC07G11290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 78aa MW: 8973.05 Da PI: 4.9218 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.8 | 8e-11 | 4 | 48 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W+++E +l+ +a++ +G g W+++ar +g ++t+++++ ++ OPUNC07G11290.1 4 EWSKQENKLFEEAIAYYGEGapdLWHKVARAIGGTKTAEEVRRHY 48 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.286 | 1 | 56 | IPR017884 | SANT domain |
SMART | SM00717 | 4.4E-7 | 1 | 54 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.73E-11 | 3 | 59 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-5 | 4 | 56 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.14E-6 | 4 | 48 | No hit | No description |
Pfam | PF00249 | 3.3E-9 | 4 | 48 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 78 aa Download sequence Send to blast |
MASEWSKQEN KLFEEAIAYY GEGAPDLWHK VARAIGGTKT AEEVRRHYEI LEDDIKLIEA 60 RRVPFPKGEA SEVPDDRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-18 | 5 | 66 | 11 | 71 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012615 | 4e-70 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. | |||
GenBank | CT836143 | 4e-70 | CT836143.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA059E21, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003569502.1 | 2e-32 | protein RADIALIS-like 3 | ||||
Refseq | XP_024314815.1 | 2e-32 | protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 2e-20 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | A0A0E0LK00 | 1e-49 | A0A0E0LK00_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC07G11290.1 | 2e-50 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1067 | 33 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 8e-22 | RAD-like 6 |