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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OPUNC07G09160.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | B3 | ||||||||
| Protein Properties | Length: 1457aa MW: 163495 Da PI: 6.571 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 88.7 | 4.8e-28 | 148 | 236 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
f+kv tpsdv+k++rlv+p+k+ae + + e+++ l++ed+ g+ W+++++y+++s++yv+tkGW++Fv++n+L++gD+v F++
OPUNC07G09160.1 148 FDKVVTPSDVGKLNRLVIPRKHAECYfprdvA-SDERGVVLSFEDRAGKPWRFRYSYWNGSRSYVMTKGWSRFVRENRLNAGDTVSFYRG 236
89*********************888**9964.446899*************************************************54 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.40.330.10 | 3.6E-37 | 141 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 2.88E-28 | 145 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.06E-24 | 146 | 235 | No hit | No description |
| PROSITE profile | PS50863 | 14.494 | 148 | 251 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 5.8E-25 | 148 | 239 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 3.4E-23 | 148 | 252 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF52047 | 3.45E-31 | 446 | 638 | No hit | No description |
| Gene3D | G3DSA:3.80.10.10 | 1.8E-27 | 458 | 634 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SMART | SM00367 | 380 | 481 | 508 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
| SMART | SM00367 | 610 | 529 | 556 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
| SMART | SM00367 | 53 | 577 | 601 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
| SuperFamily | SSF52540 | 7.45E-36 | 653 | 898 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF00931 | 1.4E-33 | 674 | 926 | IPR002182 | NB-ARC |
| PRINTS | PR00364 | 2.9E-10 | 678 | 693 | No hit | No description |
| PRINTS | PR00364 | 2.9E-10 | 748 | 762 | No hit | No description |
| PRINTS | PR00364 | 2.9E-10 | 845 | 859 | No hit | No description |
| SuperFamily | SSF52058 | 1.11E-30 | 961 | 1184 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 2.8E-19 | 1044 | 1172 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SuperFamily | SSF52058 | 1.11E-30 | 1224 | 1366 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 2.8E-19 | 1237 | 1352 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SMART | SM00367 | 19 | 1341 | 1370 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
| Gene3D | G3DSA:3.80.10.10 | 6.2E-4 | 1353 | 1436 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| PRINTS | PR00364 | 2.9E-10 | 1402 | 1418 | No hit | No description |
| SMART | SM00367 | 540 | 1404 | 1429 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0043531 | Molecular Function | ADP binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1457 aa Download sequence Send to blast |
MSGYWRRRRS GKPADVDPAG NPSGGYCREG EKREQAEILS VRPRNTSGGF SDAEYSYGSN 60 SVGSFAGGLG LDLSLVPTPP ASSSLHTSGS RRASGPSDSD QISTRKTSGR WGWGWGRTRR 120 RPQAPGDADD DVGGGGAAKV IIEKEHMFDK VVTPSDVGKL NRLVIPRKHA ECYFPRDVAS 180 DERGVVLSFE DRAGKPWRFR YSYWNGSRSY VMTKGWSRFV RENRLNAGDT VSFYRGASEV 240 TRDRLFIHSK RQMQDANLAG GGGTNILPHL GYAGRQGHIN LLFQLLVQVR TMVSSFGEAG 300 SPPPNAPLAT VQFFTYKALK DCLQDLHYYS LLSMVGRNHK SQSRSARFVC GVDAKIRDTI 360 PTLDALIQFR SLSLSDPALQ IYGARTVSSH CILLCRGVLG IMGVRCSENM EEEQRMVQVP 420 AFDDLKYPGH GKITRMEEQT MPLSLANPIY LLPTAITNLL YLDLSNCTDI VQLPPSLGSS 480 LHKLSALNLS CCYSLHALPD SLVCLYDLQI LLLSFCHNLQ NLPVPFGDLS NLRLLDLSGC 540 HSLILLPDSF VNLGSLENLN LSDCISLMGI PQQFGNLRKL EYLNFAGCYI VDLDVYCLSK 600 LVNLKCLTLS HHTDIKDFPY SFTDLTRHLD LSRWWKNNWV HTQCNLKSYR CHQQSIINKL 660 LSDGSDEGDI TSEQSLTSIC IFGESGTGKT ELLHEIYNDQ MILEGFHLRI WINMCDKKRL 720 LEKIIEFTTC AYCYDAPSSI LEETVREELN GKRFLLVLND ADIEKQCFWT DVWKLANVGA 780 AGSAFIVTTR SKEVASVFGA METYDMNILS KEECFMVFQE HAGCGLDINN YHELTKVGWK 840 IVEKCGSNPL CIKALSGLLC HSETALSEID SLVGGIVPAL RLCYDLLPSC LNQCFKFCSL 900 FPKDYVFVKH HIIQLWISQG FVYPEEDSHL EDTGLQYFNE LFCRSFFQHC PFSNDHEDKF 960 VMHELFHDLA RSVSKDESFS SEEPFFSLHE NICHLSLVIS DSNTVVLTKE HRHLQSLMVV 1020 RRSASEYSSS FVPLLKILGL NDLLMKCGFL RALNLSCTTI VDLPGSIGMM KHLRFLALNN 1080 TKIKSLPTEI GQLNTLQTLE LKDCCCLIEL PESTKNLMKL RHLDVQKELG NIHVSMPSGL 1140 GQLTDLQTLT VFNIGDDLSH CSIRDLKNLS GLRGHVHITG LQNITAGDDA KEENLVGKQF 1200 LQALTLEWCC SSEEMEDESD KEIANQVLQN LQPNTSIQEL AIQNYPGNLF PNWIKDSCLC 1260 MLVSITIDNS QDCNEIPYLG DLPCLKFLFI QKMYAVENFG QRSNSLTTDG KDAPRFPSLE 1320 ILNLWEMYSL QFWNGTRYGD FPQLHRLSIS RCPKLSNLPP LISLVYLSLH CGDQLPALSE 1380 FPSLKSLKIE GFQKLKSVSF CPEMPMLQKL EISDCKELVS IDVPLLSVSN LKVVRCPKLH 1440 FGGSSLEGCL MWEKFKR |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5os9_A | 5e-44 | 141 | 252 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
| 5os9_B | 5e-44 | 141 | 252 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
| 6j5t_C | 3e-41 | 671 | 1267 | 177 | 771 | Disease resistance RPP13-like protein 4 |
| 6j5t_F | 3e-41 | 671 | 1267 | 177 | 771 | Disease resistance RPP13-like protein 4 |
| 6j5t_G | 3e-41 | 671 | 1267 | 177 | 771 | Disease resistance RPP13-like protein 4 |
| 6j5t_L | 3e-41 | 671 | 1267 | 177 | 771 | Disease resistance RPP13-like protein 4 |
| 6j5t_O | 3e-41 | 671 | 1267 | 177 | 771 | Disease resistance RPP13-like protein 4 |
| 6j5u_A | 3e-41 | 671 | 1267 | 177 | 771 | Disease resistance RPP13-like protein 4 |
| 6j5v_A | 3e-41 | 671 | 1267 | 177 | 771 | Disease resistance RPP13-like protein 4 |
| 6j5w_A | 3e-41 | 671 | 1267 | 177 | 771 | Disease resistance RPP13-like protein 4 |
| 6j6i_C | 3e-41 | 671 | 1267 | 177 | 771 | Disease resistance RPP13-like protein 4 |
| 6j6i_F | 3e-41 | 671 | 1267 | 177 | 771 | Disease resistance RPP13-like protein 4 |
| 6j6i_G | 3e-41 | 671 | 1267 | 177 | 771 | Disease resistance RPP13-like protein 4 |
| 6j6i_L | 3e-41 | 671 | 1267 | 177 | 771 | Disease resistance RPP13-like protein 4 |
| 6j6i_O | 3e-41 | 671 | 1267 | 177 | 771 | Disease resistance RPP13-like protein 4 |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK289024 | 0.0 | AK289024.1 Oryza sativa Japonica Group cDNA, clone: J090090I16, full insert sequence. | |||
| GenBank | AK318581 | 0.0 | AK318581.1 Oryza sativa Japonica Group cDNA, clone: J090090I16, full insert sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015644837.1 | 0.0 | uncharacterized protein LOC4342906 isoform X1 | ||||
| TrEMBL | A0A0E0LJ93 | 0.0 | A0A0E0LJ93_ORYPU; Uncharacterized protein | ||||
| STRING | OPUNC07G09160.1 | 0.0 | (Oryza punctata) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP12577 | 12 | 16 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G01030.1 | 8e-45 | B3 family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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