PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC07G07720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 364aa MW: 36706.2 Da PI: 9.1287 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.8 | 1.1e-38 | 72 | 131 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e lkcprCdstntkfCy+nnysl+qPr+fCkaCrryWt+GGalrnvPvGgg+r+nk+ OPUNC07G07720.1 72 PEPGLKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRG 131 56789****************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-32 | 62 | 124 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.2E-32 | 76 | 130 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.711 | 76 | 130 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 78 | 114 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MWNQHQAHHG HHQLHRSVEE NQLPITSGLL LAPRPDMAAA AAGILPVSGG GASSARPASM 60 AERARMAKIP QPEPGLKCPR CDSTNTKFCY FNNYSLTQPR HFCKACRRYW TRGGALRNVP 120 VGGGCRRNKR GSKPSNSKKP SSSAAVATGG AMATSQLQLP FGSLQYPLGC DGGGAGGGHG 180 IIGGGGGPSR LGFPELSSLH AAAAVDYQLG GGGEGLGLER PRLPPAQLQQ FPFLARPNSA 240 VQPPPLMSAA GISYPFGDVA AAGLGGDMPA NANVTGSAGL ITQMASVKMN DIDNPPPSAA 300 TTASSPIEFL GLRGSLQFWG NAGGGGDGGH CGGGDGAGGS AGPGGGGGWS DLPAFDLSTS 360 GNIL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068542 | 1e-152 | AK068542.1 Oryza sativa Japonica Group cDNA clone:J013155H18, full insert sequence. | |||
GenBank | AP004303 | 1e-152 | AP004303.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0407H12. | |||
GenBank | AP014963 | 1e-152 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645541.1 | 1e-153 | dof zinc finger protein DOF5.1 isoform X3 | ||||
TrEMBL | A0A0E0LIR5 | 0.0 | A0A0E0LIR5_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC07G07720.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4893 | 29 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02460.1 | 3e-37 | Dof family protein |