PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G07310.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 288aa    MW: 31661.9 Da    PI: 5.2606
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G07310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.91.4e-51171421128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeelv +yL+++++g++ ++  +i+e+d+y+++Pw+Lp+++  +++ewyfF++rd+ky++g+r+nra+ sgyWkatg dk+v++
  OPUNC07G07310.1  17 LPPGFRFHPTDEELVAHYLCPRAAGRPAPV-PIIAELDLYRYDPWELPARALFGRREWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPVVH 109
                      79*************************999.88***************87778999************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +g++ g+kk Lvfy+g+ p+g+kt+W+mheyrl
  OPUNC07G07310.1 110 -GGKTAGIKKALVFYHGKPPRGVKTEWIMHEYRL 142
                      .99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.01E-6313172IPR003441NAC domain
PROSITE profilePS5100559.78317172IPR003441NAC domain
PfamPF023654.3E-2718142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MAAAARRVRD AEADLNLPPG FRFHPTDEEL VAHYLCPRAA GRPAPVPIIA ELDLYRYDPW  60
ELPARALFGR REWYFFTPRD RKYPNGSRPN RAAGSGYWKA TGADKPVVHG GKTAGIKKAL  120
VFYHGKPPRG VKTEWIMHEY RLAAGAAAAK KGGAGAGTLR LDDWVLCRLY NKKNEWDKMQ  180
SKKEEEEDAA MAAQSWGETR TPESEIVDND AFPEMDSLPV FNGGGGGGDI LVLPKEEAQD  240
DDWLVGMSLD DLQGLGSLLQ SDDLSMLVPP PLPDAAVAKM EPLGAPFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-9261784174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:20632034). Induced by dehydration and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645028.11e-156NAC domain-containing protein 67
SwissprotQ7EZT11e-157NAC67_ORYSJ; NAC domain-containing protein 67
TrEMBLA0A0E0LIL80.0A0A0E0LIL8_ORYPU; Uncharacterized protein
STRINGOPUNC07G07310.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44143071
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.11e-76NAC domain containing protein 32
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  3. Ghosh T,Rai M,Tyagi W,Challam C
    Seedling stage low temperature response in tolerant and susceptible rice genotypes suggests role of relative water content and members of OsSNAC gene family.
    Plant Signal Behav, 2016. 11(5): p. e1138192
    [PMID:26829663]
  4. Rahman H,Ramanathan V,Nallathambi J,Duraialagaraja S,Muthurajan R
    Over-expression of a NAC 67 transcription factor from finger millet (Eleusine coracana L.) confers tolerance against salinity and drought stress in rice.
    BMC Biotechnol., 2016. 16 Suppl 1: p. 35
    [PMID:27213684]