PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC07G03260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 432aa MW: 45976.8 Da PI: 8.1519 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 127.4 | 1.5e-39 | 54 | 196 | 2 | 132 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec....eaes 77 g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a +ai++l+++ + + + OPUNC07G03260.1 54 SGGKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAIDKLPSLdtasfpthpasaaaA------AitsaPPLT 141 689*************************************************************888775554322220......122222222 PP TCP 78 ssssasnsssg.....kaaksaakskksqksaasalnlak.esrakarararertrekmri 132 + s + ++ +++ +s+ s++s+ s+l+l++ esr kar+rarer++ ++ OPUNC07G03260.1 142 HASD------AdadqqQQLTKSGCSSTSETSKGSVLSLSRsESRVKARERARERSAAAASK 196 2222......122222566777799999999***********************9877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.2E-40 | 55 | 193 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.189 | 56 | 114 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.295 | 176 | 198 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MELGGSNNKR GRVTEEEDDG GEPEAKRHQN QQLLPWAHQQ QHPASRIYRV SRASGGKDRH 60 SKVYTAKGIR DRRVRLSVST AIQFYDLQDR LGYDQPSKAI EWLIKAAAAA IDKLPSLDTA 120 SFPTHPASAA AAAITSAPPL THASDADADQ QQQLTKSGCS STSETSKGSV LSLSRSESRV 180 KARERARERS AAAASKDAGD DAATATATAP ASSQAASFTE LLTGMAAANA APADHKQQAW 240 QPMTVAAATA DYIGFAAAHA HPRKSGAGHH SAMPHTFASP APHLANITPI AMAPTQHFTL 300 TPAAAAEHHA EMTHFSFDHF MPVQAAAAAA STPAGGDYNL DFSMSSGLVG VHSRGTLQSN 360 SQSHLSSHHH HHHHHHQQQQ QLQRLSAPLD APNIPFLFSP APAPTAADTQ FAAALQLWDG 420 FRHADIKEKG KH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-31 | 61 | 115 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-31 | 61 | 115 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003704 | 0.0 | AP003704.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1048_C10. | |||
GenBank | AP006163 | 0.0 | AP006163.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:B1364A02. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644886.1 | 0.0 | transcription factor PCF6 | ||||
TrEMBL | A0A0E0LH84 | 0.0 | A0A0E0LH84_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC07G03260.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 9e-36 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |