PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC07G02800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 455aa MW: 49144.4 Da PI: 8.5867 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.5 | 1e-17 | 272 | 318 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka+iL +A+eY+ksLq OPUNC07G02800.1 272 VHNLSERRRRDRINEKMRALQELVPHC-----NKTDKASILDEAIEYLKSLQ 318 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.27E-17 | 264 | 322 | No hit | No description |
SuperFamily | SSF47459 | 2.36E-21 | 266 | 330 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.73 | 268 | 317 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.4E-15 | 272 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-22 | 272 | 326 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-18 | 274 | 323 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MLHCYVTSQS RQAKKTKNIR RFVNPSSPPY KKGYGHVSFT LSALISPTKS SPTRTIHPFL 60 PPEISPFLAH FVSLTSSAGS RRRKSAVRPC RRIGGAMDGG ATARSSSAMM NHNQKKPLLL 120 DGELVELIWQ DGGVVAHAQT HHRSSGLARS GVTGEEETAA SAWFADVSSR LDEAGLSICG 180 SNAVPAPALP ADDDDVDIDA GAPREEEEEE GTGAARAGAS SSGGSGSGSG SGSYRLFKRG 240 KDELVDSLSE VADETRPSKR PAAKRRTRAA EVHNLSERRR RDRINEKMRA LQELVPHCNK 300 TDKASILDEA IEYLKSLQMQ VQIMWMTTGI APMMFPGAHQ LMPPMGMGLN TACMPAAQGL 360 NQLQRASHYM NNSLPNQMPQ IPSPAMNAPN VQNDMQNDNR IRGPRNPFLH CNDALTATAQ 420 VPGLFPYGSQ IAEQNEIQEL LTNAVIPSSS DGTIT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 84 | SRRRKS |
2 | 263 | 280 | KRRTRAAEVHNLSERRRR |
3 | 276 | 281 | ERRRRD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN400276 | 0.0 | JN400276.1 Oryza sativa Japonica Group rice phytochrome-interacting factor 4 (PIF4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648043.1 | 1e-176 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1 | ||||
Refseq | XP_015648044.1 | 1e-176 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1 | ||||
Refseq | XP_015648045.1 | 1e-176 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1 | ||||
Swissprot | Q10CH5 | 3e-85 | PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 | ||||
TrEMBL | A0A0E0LH33 | 0.0 | A0A0E0LH33_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC07G02800.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3174 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 5e-29 | phytochrome interacting factor 3 |
Publications ? help Back to Top | |||
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