PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G02570.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 508aa    MW: 52937.6 Da    PI: 7.3281
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G02570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06443462221
                      -S---SGGGGTS--TTTTT- CS
          zf-CCCH   2 ktelCrffartGtCkyGdrC 21 
                      k +lC  +++ G C+ G+rC
  OPUNC07G02570.1 443 KARLCEQWMQHGKCPKGARC 462
                      669***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035633231260IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.92231261IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.38E-5440471IPR000571Zinc finger, CCCH-type
SMARTSM003560.007441468IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.695441469IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-6443470IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.573480507IPR000571Zinc finger, CCCH-type
SMARTSM003564.2481506IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MSNPNFPRFH GLNAGAAPFV PRTPPVPRME AGAGLAGRMF GSGGAATGTG ETRSLATTVH  60
GGATSVLAGP ISPASSGSAA TSALATTGDT SGIAGHLGGS TIFVPSSRDA VYVPISRDIR  120
LLPIGQFHQD HVKLGSASAG VHMINSSSGD DMINSSAGDF SSSPAPRLDA IARPLSWVSG  180
HSTACSLLSP VASSYESSSA AANSEAAATQ PQDSWDALWE DTGFAFFCLR DPKTVLCWRY  240
IYGGDMYCSM GCNCFDAHGY TDLQSKIRTG VAAGRSYSDL DFSTVSQFAS VFSSQHPPAS  300
DEWNFAVGNM QQQQQRSMTP SASRGATAAT DAVGEAPPAD ADAHSGTSSS AVSTDMSLVR  360
TTPPPSPSAA AVAGSPSPTT PGPGNGGATP TTGADENNVG EINDVDYPRL LPFGPGPAPA  420
PAPARSSSRA PERRRRPKIT DRKARLCEQW MQHGKCPKGA RCYDAHGLED QIRVPVKRMT  480
HRKDRCWDYL NGQCRNGVNC SRPHEGYS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1432442RRRRPKITDRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0LH050.0A0A0E0LH05_ORYPU; Uncharacterized protein
STRINGOPUNC07G02570.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1910322