PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC07G02500.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 972aa MW: 107240 Da PI: 8.5356 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.6 | 5.7e-08 | 292 | 384 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT..............................................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..............................................tWktIartmgkgRtlkqcksrwqky 47 +++W+ E e+l++++kq + +W++Ia++ gR++ +c srw+++ OPUNC07G02500.2 292 KQPWSDVEKEKLAKGIKQQYQEalildsinngsstgdfsavdmayaltntagnfevtaeslrsvlpliNWDKIAAMYLPGRSGAECESRWLNF 384 79****************99999***************************************************99888************97 PP | |||||||
2 | Myb_DNA-binding | 28.7 | 3e-09 | 392 | 436 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT+ E+++l+ v+q G+++W Ia t+g++Rt+ qc r+q OPUNC07G02500.2 392 NAWTAREEKRLLLTVQQQGMNNWINIAVTLGTHRTPFQCLVRYQR 436 68**************************************99995 PP | |||||||
3 | Myb_DNA-binding | 43.4 | 8e-14 | 446 | 489 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W +eEd++l av+ +G++ W ++++ m gRt++qc +rw+k l OPUNC07G02500.2 446 DWAEEEDLQLQAAVNTFGTN-WQLVSASMD-GRTGNQCSNRWRKTL 489 6*****************99.*********.************975 PP | |||||||
4 | Myb_DNA-binding | 51 | 3.3e-16 | 497 | 542 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 grW+ +Ed++l avk++G+g+W++Ia+ ++ gRt qc +rw+++l OPUNC07G02500.2 497 GRWSLDEDKRLMVAVKLFGSGSWNKIAQFIP-GRTQSQCNERWRNVL 542 8******************************.************986 PP | |||||||
5 | Myb_DNA-binding | 31.4 | 4.4e-10 | 549 | 593 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHH.HHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIa.rtmgkgRtlkqcksrwqky 47 g W +eEd +l+ v ++G+ W++Ia ++++ +Rt+++c rw+k+ OPUNC07G02500.2 549 GEWRPEEDSILLASVDEFGPC-WSKIAgAKIP-HRTDNMCLRRWRKL 593 68*****************88.****945777.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.377 | 287 | 385 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.3E-5 | 291 | 387 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-11 | 293 | 310 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00106 | 356 | 384 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-11 | 357 | 398 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.26E-5 | 360 | 399 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.49 | 386 | 442 | IPR017930 | Myb domain |
SMART | SM00717 | 9.7E-4 | 390 | 440 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.8E-21 | 390 | 485 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-5 | 392 | 436 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-10 | 399 | 449 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-11 | 443 | 491 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-12 | 446 | 488 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 9.721 | 447 | 489 | IPR017877 | Myb-like domain |
CDD | cd00167 | 2.34E-9 | 447 | 489 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-14 | 450 | 492 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.971 | 490 | 546 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-18 | 493 | 544 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-12 | 495 | 544 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.34E-26 | 495 | 590 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.9E-15 | 497 | 542 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.57E-11 | 498 | 542 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-15 | 545 | 598 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-8 | 547 | 596 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-8 | 549 | 593 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 13.267 | 549 | 598 | IPR017930 | Myb domain |
CDD | cd00167 | 5.80E-9 | 550 | 593 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 972 aa Download sequence Send to blast |
MDFYSDDSDP DIDEDLQRDL DALRQSCILS GNDPDAAVAQ VSACLAAAAP AAAVGAAANG 60 LSDDDDEEEE DEDLALVRSI RENLLLNKAS PSSPLPRPIC VWPPSDSEDD EDDLETLRAI 120 QRRFSHYHSG TSSGSEINTK NEASKEGSGD LFRNGLDEEF DVEKQNKEAI TRTGFPKAAL 180 LLVDALKKNR ACQKLIRRKM ITIEAKIEEN KDLRDRVKCL LDYQLSCRKA FGKILCQKED 240 PRVRLISSRK PCAQSTKNKD KKTPALFLGP ADNPHVSKYK MVLKQFPMSL QKQPWSDVEK 300 EKLAKGIKQQ YQEALILDSI NNGSSTGDFS AVDMAYALTN TAGNFEVTAE SLRSVLPLIN 360 WDKIAAMYLP GRSGAECESR WLNFDDPLIN HNAWTAREEK RLLLTVQQQG MNNWINIAVT 420 LGTHRTPFQC LVRYQRSLNH CILNKDWAEE EDLQLQAAVN TFGTNWQLVS ASMDGRTGNQ 480 CSNRWRKTLN PERSRVGRWS LDEDKRLMVA VKLFGSGSWN KIAQFIPGRT QSQCNERWRN 540 VLDPDIDLGE WRPEEDSILL ASVDEFGPCW SKIAGAKIPH RTDNMCLRRW RKLCQDKLPS 600 VKAAQQIKKS ILQCNFVDRE TERPAIGPSD LMSLVRSKVD GSDENTSSAQ VRKPRKRSRI 660 PCEDNVLPGD TLNSSPSMNI PLSESIDADA SVNTASANSK KKPSRSRSKK QTDENLAVCD 720 VNNSSNCSSG ARKRKRSITD KNQVVQKKMR GSISGDNEAV VETMGCSISS DNEVAMKRKT 780 GSTSVGEEGT AKKTTRGSLS GKEGEVNKRL RGSISGVQKG ATKQRMRGSV SIDNHGAVMK 840 SKKAPSRKSA KENSKADSMA NAAFGLDLPT VASEYRDADN GSVNNGRIKS TPRPKQMNMT 900 EGSADKFSTS TRLADCMSFG RINGSSRVAR HLCVSVKPLS NMIQSNGPSD DVSAKVISAG 960 TDPTSVENSN TA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 8e-26 | 363 | 598 | 8 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 8e-26 | 363 | 598 | 8 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK065452 | 0.0 | AK065452.1 Oryza sativa Japonica Group cDNA clone:J013025M19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025883083.1 | 0.0 | myb-like protein L | ||||
TrEMBL | A0A0E0LGZ2 | 0.0 | A0A0E0LGZ2_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC07G02500.4 | 0.0 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 1e-147 | myb domain protein 4r1 |