PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC07G01740.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 464aa    MW: 50337.8 Da    PI: 7.2529
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC07G01740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.22.1e-08116164955
              AP2   9 dkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  OPUNC07G01740.1 116 HRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 164
                      899**********77776664346655.77******************98 PP
2AP247.73.9e-15209258355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  OPUNC07G01740.1 209 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 258
                      9***************999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.315107172IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-10114173IPR016177DNA-binding domain
SMARTSM003801.4E-13115178IPR001471AP2/ERF domain
PfamPF008479.2E-6116164IPR001471AP2/ERF domain
CDDcd000182.79E-12116172No hitNo description
Gene3DG3DSA:3.30.730.105.2E-9116173IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-18207267IPR016177DNA-binding domain
CDDcd000182.50E-23207268No hitNo description
Gene3DG3DSA:3.30.730.101.0E-18208266IPR001471AP2/ERF domain
SMARTSM003801.9E-33208272IPR001471AP2/ERF domain
PROSITE profilePS5103219.296208266IPR001471AP2/ERF domain
PfamPF008472.2E-10209258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MTNSNNGNAG TNAAASGWLG FSLSPHMASS TMDEHHHVHH QQQQQHHHQQ QHGLFFPSVT  60
TAAAAAYGLG GDVVAATNGY YSQLASMPLK SDGSLCIMEA LRRTDQDHHG MLDCLHRWTG  120
RYEAHLWDNS CKKEGQTRKG RQGGYDMEEK AARAYDLAAL KYWGPSTHIN FPLEDYQEEL  180
EEMKNMTRQE YVAHLRRKSS GFSRGASMYR GVTRHHQHGR WQARIGRVSG NKDLYLGTFS  240
TQEEAAEAYD VAAIKFRGLN AVTNFDITRY DVDKIMASNT LLPADLARRN TTTTTSSSKD  300
DHSSDAAAAA IIPVHHHQRD IAVADTLWKA TNAAAPRQQQ QQQHDDVVLS GADHAAFSVL  360
HDLVAVDAAA AAAQQQQHMS LSAASSLVTS LSNSREGSPD RGGGLSMLFA KPSPAGVTAA  420
SQQASKLMAA PLPLGSWVSS PPASARPAAV SIAHMPLFAA WTDA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1098480.0AK109848.1 Oryza sativa Japonica Group cDNA clone:002-148-F05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882595.10.0AP2-like ethylene-responsive transcription factor CRL5 isoform X1
RefseqXP_025882597.10.0AP2-like ethylene-responsive transcription factor CRL5 isoform X2
SwissprotQ84Z020.0CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0E0LGN00.0A0A0E0LGN0_ORYPU; Uncharacterized protein
STRINGOPUNC07G01740.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-110AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]