PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC06G25680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 414aa MW: 45686.2 Da PI: 5.4705 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.4 | 1.2e-16 | 27 | 71 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a k++G W+ I +++g ++t+ q++s+ qk+ OPUNC06G25680.1 27 REKWTEEEHDKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 71 789*****************55.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.88E-16 | 21 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.585 | 22 | 76 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 3.8E-16 | 25 | 74 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.9E-14 | 26 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 27 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-10 | 27 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.87E-11 | 29 | 72 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MAQLEPNEGM EEFPVKVRKP YTITKQREKW TEEEHDKFLE ALKLYGRSWR QIQEHIGTKT 60 AVQIRSHAQK FFSKVVREPG SNNAIEIPPP RPKRKPLHPY PRKCANSGSD ANPATGQSKL 120 APVSSSSVSD QENGSPISVL SVMQSDAFGS SVSNPSTRCT SPASSDDGNN IPTFTSGEDN 180 NVPCEQTGID QSHKEIDQDR KDVDNMSEED SSEEEVQETS LKLFGKTVVI PDPRKRSSSE 240 PKHENEEQIS QHSREEILRA SSSVGEIPAA YSAPNGWLLS YNSFPFHFGG SSTDARIPPL 300 HVWWPYYGFA PISHPRGLST VMQQTEGSDE SDGGKSHPAE SSSDSVENVQ MTAPHSSRVV 360 ESLGAIYVRE SGSSFELKPS ANSAFLRVKP SNSGDEEDTG WCKQFVAVRK IHVD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT829523 | 0.0 | CT829523.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128H13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644385.1 | 0.0 | protein REVEILLE 1 isoform X1 | ||||
Refseq | XP_015644387.1 | 0.0 | protein REVEILLE 1 isoform X2 | ||||
Refseq | XP_015644388.1 | 0.0 | protein REVEILLE 1 isoform X2 | ||||
TrEMBL | A0A0E0LFX4 | 0.0 | A0A0E0LFX4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC06G25680.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7783 | 36 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37260.1 | 8e-38 | MYB_related family protein |