PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC06G24320.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | SBP | ||||||||
Protein Properties | Length: 474aa MW: 50763.8 Da PI: 8.8858 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.5 | 1.3e-40 | 180 | 256 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC++dls+ +eyhr+hkvCe+hskap+v+vsgle+rfCqqCsrfh l efD++k+sCrrrL++hn+rrrk+q+ OPUNC06G24320.4 180 CQVEGCKVDLSSSREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARRRKPQQ 256 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.4E-32 | 172 | 241 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.3 | 177 | 254 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.88E-38 | 179 | 259 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.5E-31 | 180 | 253 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 474 aa Download sequence Send to blast |
MASFGMNWNQ KSPVFWDWEN PAPFGPNTME NPKSIPHPEP RGVVVGAANH GSTNSSGGTF 60 TSSSELANGS SKSSLSASFD SSSKLGNSLE FRFASVKGHG KNMCKDGEAG RVEDSGTSPA 120 VAVSHGEPVI GLKLGKRTYF ENVCGGQNVK SSSAASAVTC PSTVVKKMKV SQQSTQSSYC 180 QVEGCKVDLS SSREYHRKHK VCEAHSKAPK VIVSGLERRF CQQCSRFHGL AEFDQKKKSC 240 RRRLSDHNAR RRKPQQEAIS FGSSRLASMF YDARQQTDIY FGQSPFGQVR SNAISSCDNL 300 GGFKFTEAKL PWMKPMKTIG LEDLHFSTVQ MPNNVVAHTV HHHDFDGLIP FKGNTTKVLN 360 QGVDPACAVV SSNSNGAPDL RRALSLLSSD SWGPADVQAG SQVHPGGVMP LLAVAATVTA 420 PTNSVSVMHA LHPSPGGGGF WQDDDDPAPL DHGVQAQAFM HLGNGSNSGF GNLH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-27 | 180 | 253 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 235 | 252 | KKKSCRRRLSDHNARRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073179 | 0.0 | AK073179.1 Oryza sativa Japonica Group cDNA clone:J033004F21, full insert sequence. | |||
GenBank | AK102136 | 0.0 | AK102136.1 Oryza sativa Japonica Group cDNA clone:J033085H14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643448.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643450.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643451.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643452.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643454.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643455.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643456.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643457.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643458.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643459.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_015643461.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_025882366.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_025882367.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
Swissprot | A2YGR5 | 0.0 | SPL12_ORYSI; Squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A0A0E0LFC8 | 0.0 | A0A0E0LFC8_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC06G24320.2 | 0.0 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 2e-50 | squamosa promoter binding protein-like 10 |